Gene detail

Detailed information of XP_028416942.1 in Dendronephthya gigantea

Genomic Location: NW_021163281.1:64170...72434
NR annotation: XP_028416942.1, uncharacterized protein LOC114541155 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028416942.1

ATGTCCAAAGGTGATAGAGTGCCGGAGGAAATCAAGAGTTTTCTGCGCTCTGTTTTAATATCTAGTAATGGCGTTAAGCAAAGCCGAGTGCAGAAGGACTACCACGAACTGGCTGGCGAGAGATTGATGTGGAAAAACTACGGATTCTCGTCGCTAAACGAGTTTCTAAAAGCATTACCTGATGTATGTATGTTGCAGTACAGTCCAAAGGATAAGGAGAATCGCGTTTACGCCGTCCAAAAGGAAGGCACATACATGTCTTCGCATGCGAAAAAAAATGCAAAGGTGGCAAGCTCGTCGATATCGCCCATCAAAGAAACGAACTTGGCCGAAAATGGTCGAATTGTTCAAAATGACGGGGAGAAGATAAGAGTGACAGTAGCAAATACACCTTTAAACACATCTTCGGAGAGCGAAAGTAGCGATCTGCTGCCGAATAGCGACGGACTCTACCAGGTGTATGTCGTGAAGTTGCCTGAAAAGTGTACTGAGACTGAACTGAGAAATTGCTTTCAAATTTATGGTAAAGTTGTGGAATGTCAGGTAGTAAGAAGCTCAATTGGAAAAAAGATTGGCTTTATACGCTACTCATTGAAAAATGAGGCACAACTAGCATTGACAGAGGGCAGGAGGAACCCTCCTAAGATCTTTGGAGTCACACTTGAGGTTGGAAAAACCAAGAAAAAGTCCAATGACAATATCGAAACATCTGTGAATGCTGCATTGAATTCAGAGCCAAGTGAGGGAAGCATATCATCATTTTCATCATCTACTCCTTCTTCGCCAATAAAAAGCAATGCCCCACCAACTGCTTTACAAGACCAACAGGCCAAAAACAATCTGCCAACAGCACCGCATTTTCCAACATACCGCCCAATGAACACACAATCAAATTCTCCTCAAACAACTGGAAACAGCCAGCCATATTTGGCTGAAAATCCACCACACAATACACAGACACCCCTTTCTGTACAATTACCCCCAACACAACTTGCAAACACGGGCAATAATGGACCATGGATACTAGACCCTAACTCAACAACAAAGACATTGCTCTCATTACAACCAGTCTCTGAAACAAAGACATCAAGTAAAGAGCCAACCAACGCTGTTTCAAAACCACTTGAAAAAGTAGACAATAGACTGAATTACAGCCTAGTAATTTCTGGTTATGATAGAAAACTGACTGAGGCCAATATAAAGCAGGTGTTTCAGAATGTTCATGATTTGCAACGCATTAAATATCAACCACATTATAGCATAGCCTGGTTTAAAACTAAAGATGCATCTTTACATGCAGTTAATGAGTTAAATGGAAAATATTGCAATGGCTGTGTTTTGTTGGTGAAACCTTTAACAAAACATCCATCAGATATGGATGAAGCGGAGCCTGTTAAGATAGTCGATGAAGAAAAATTACCTGTAGAGTTTCAGGATGAATTTACCAAGATCTACGACTTCTTTAGCGAAGCAATATCAGGTTGCTGTAGGCAAGACTATCTGCACTGGCTGAACAATCTACCATCAATATTTGAAGTGAAAATAATGGATCTCATTGATCCTTGTACTTTCTGGGTTCACCTTTCGGACGGGACAAACGCATACCGTGATTTCAATGAATTAACACATCAGCTTTCGTTGATCAAACCATCTTCTGGTTTAAGTTGTTTAAAGAATAATGAATTTGGTGCAGGACAGTTTTCTGATGATGGACTATGGTACAGATGCTATTGTCGTGAGGCTTCAACAGATGGTCGCCTGCTTCATGTGATCTATATTGATTATGGTAACACTGAATGGTTAGAAAGACAAAGAACCGTGAAGTTGAATGACTCTTACTTTAAACTTCGACCTCAGGGCATCCTTGTTAAACTTTCAGGATTTAGATTTAAGTCAAGCAACAACAGCGAACTTGACAGCAAATTGTTATCAACAGCAAAAAATCTCCTGATGTTTAAATGTTTTCAAGCGAGAAGAGGTTCTGTGGATTCTTCGAAGCCGTTTCTGTTGGAAATCGAGCTTTTGCAGTCCAAAGGAGAATCGGTCCTTTCTGAGCTGGAGTCGTTATCTGGAGTGGAAACCCGGCAAAAAGAATCATCTCCACCCCCTCCGCTTCTGTTATCTGGCCAACCCCCCGTGCCAACAATTGTTAAACCGCCAAAGGACACGTTCTCTTCTGTTGACAGCGAAATTCATTACGTCTGGATAACTAATATAAAATCTCCCACAACATTCAACTTCCAACTGGTGAACAGTTCTTCCAGAGAGGCTATAAAAAGAATACAAGAAATGCTTCTGAAATGCAATATTCAGAATAAGGTTAATGTTAAAGATCCAAAAATAAGTAACCTCGTTTGCTACCATAAAAATGGACTAGAAAGGTCTCGTGTGACCTTCATAAGCTCCACTGGTACTCCAGGAAAGGTGACAGTACTTCATGTGGATACGGGTAAAGTGGCTGTAGTTCCTCTGATGTCATTCATTGCGTTACCACAAGAAGCGAAGGATATTCCTTATCAGGGCAGGCCAGCAATTTTGTACCGTGTTCCACAGGACCCTCTGGCAAAGTCTGCTAAAGCTTTGGAATTTATCATTCAGCAAGCAACCGAGGTTCTCCAAGCAATTATTGTGAATGAAAATAAAGATGGATCTGTTTACGTAGAGCTGTTTAATGCAGAAGGGGCGAGTATCAATAGAACGCTGATAGAAATGGCAAACACCGAACGAGAATTATCTAAAGCCACACCACCTTCTGAAGTGTCCAGGCAAACCCGCAAAATATCGACTGAGGCACTGCATAACGGTGACCAGTCGGATCCCAAAAGTATGACACCGTCCTTGCAATGTGATGGTGGTGAAGCGGTGTTTAGTTCTGGTGCTCCGATCCAAAGTCAGTCAATCTCACCGAGCGGCTCCAGTCGGGCACCCCAGAGCCAGTCCCAAGTTTCCTCAAGAAGAGGGGAATTGGAACGAGGTCACGTGTCCCCTGGTAATCAAGCATCTGCCCGAGTAATGCAAGGATTGTCCAACCAGCACCACCCAGAGTGCCCCAAGACCTAA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12872	OST-HTH	OST-HTH/LOTUS domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00567	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002999	Domain	Tudor domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR025605	Domain	OST-HTH/LOTUS domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035437	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR050621	Family	Tudor domain-containing	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR041966	Homologous_superfamily	LOTUS-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22948	TUDOR DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala