Gene detail

Detailed information of XP_028417506.1 in Dendronephthya gigantea

Genomic Location: NW_021163331.1:60736...74892
NR annotation: XP_028417506.1, fibronectin type III domain-containing protein-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_028417506.1

ATGATTTGGTTGCTTCTATTTGCACTGGCCTTAGTTTCTGGGCAGGAAAAAATTCCTAAAATATTCAAAGACGCCGACGACGTTTACTCCTTCCCGGATAATTTTCAAAGATTGCGAGTGGAAACAAACGATGTCCCGTCCGCGAATTACTATTGGCTGAAAGATGACAAAAAGATCACAGGGAAAACTGAGCCAAAATTTCTTCAGTATGACCAACGAATATTGATGCCAGAAACTAAAGACAAGAAATATGCTGGAAAATACCAGTTTGTGATGGTAACAGATGCTGGAACAATCAAAGGAAGAGAAGTCAAAGTTGAATTTACTTATGCTGGGGAATTTGACCAAACCGTCCCCCCAAACCGGACAGAAGATGTCGTTGTTGGTCAGGCAAATTTTATCAAATGTCCAAAGCATGAACCTGGTTCAAATGTAATCTACAAATGGGGAAAATCGACTGCCATAACTGGAACAAAGTTTTTAGAGATCAGACCAAACTATATAGTTTTGGATGACGGAACATTGTTCTATTCGCATCTTACTGAAGAAAATGCAAATCAATTCAATAAATACGGGTGGGTATGCGGCATGGAGGCAAAAGTTGGTGACAAGAATCAATTCGGTTGGGCTGAGCATGTAATAACAACATTCAAAATAGTTAACACAAACACGACAGAATTTGGGCCAAAAATTGTCACGAGGCTGCCGCAGAACAAACGATTTCAGGAGGGAGACACCATATCAATGAAATGTGCCGCCGCTGGAAGACCAACTCCTTCGTATTCATGGAAGAGAATTGATGTTGAGGGCAAAGAACATGCAATTGTGAATGGCAAAGGTGGCATGAAATTTGAGGACGGTGATGCCAGACTCCTTGTCCTGAATTCTGCAAAAAGAGAGCATTCAGGTCGATATTTCTGCACGGCTTCGATTGGGAACAAAAATGATACTGTCGAGGGTTCTTTAACGTTTGAAGTTGAACCAAAATGGGTTGGTAAGGACATCGAATCTGTGGAGCCGTCAATCTATACCAGTCATTCATGGACATGCAATGCCACGGGGTTCCCGGCGCCGAAATACAAATGGTATAAAAATGGTGATCAAATCCAAAGCAGCAAGACGCATGTAATTGATAAAGGGACAATTACTTTTCCAAATTTGACACAAGCTGATACTGCCATGTATCAGTGTGTAGCTGAGAATACCATGGACAATATCTATCAAACTGCATATTTAGATGTTCAAGCTGAGAAACCTGTCTTCAACATGAACACTGGCAAGACAACACTATTCCTGGGGGCGAAAGGGACGATTAAATGTCATGCTAAAGCTGCTCCTGCTGCTAAAAACACGTGGGAGAAAGATGGAGTCAAGATAAATATATCTTTCTCGCGATATACACTGGTTAACAATGAACATCTTGTCATAGACCCAGTGAAGAAACAAGATATAGGCAATTATACATGTAAAGCTAAGAATCTTTATGGTGAAGATGTAAAGAAGATCATTGTTCAAGTTGTTGGAGAAGTCACTTTCATCTCGGAACCGAACGATGTCATCGCAAAAAAGGGGGAATCGTTTAAATTGAAATGCGAAGCTGAAGGTGACAAAGACAGTTCCTTTAGGGCCACAATCAAATACAAGTGGAAGTACAATGATAAAGATATTGAACTCAATGATACCATTGTTTGGTCTGATGACGCTCATTCCTTAGTTTTCCTCAATGCGCAGGTTCGTCAGAGTGGAAAGTATACATGTATAGCATATATCGACAAGCCATCTTATGCTGAAAAAAAAAGCTCTGCGAAAGTTGTTATACGAGGTCCGCCTGAGGCACCGAATAAAGTGCAAATCGAAGGAGACTGCAGCAAATTCTCCGCGAAGTTAACATGGAATATACCGGGCAACAACTATGATCCAATCAAACACTTCATCATAGAGACGGCCACCACTTATGATACGGAGTGGCATAAAAATGAAAGCGACCATATCGATCCAAATTTGAAAGAAAAAACGATCAAAGGTCTCTCGCCCTGGACCTCTTACCGATTTCGTGTGCTAGCGTTTAATGCAATTGGCCAAAGTGATCCAAGTGAACCTACGGAATTAAAGAACTGTAAAACCCCACAGAAAGCACCATTCATTTGTCCTGCGGTTGAAGCTATACCAGGAAAAGCGAACGAATTGACCTTGAAATGGAAGGAAATTAAATTAATGGAACGAAACGGTGAATCTTTTCGCTACCTGCTGCAGTATTGGCCAGATGCATCACCTGAAAAACGTCGGAACAAAACTTTCAATCCCGTCCAATTAGAATTTGAAGTTCCTAATGCTGGGTATTATCAACTGTGGAAGTTTCAGATTCAAGGAGTAAACAAAGTCGGCGCTGGACCATACTGTACCGGGCAATCTCGTTCTGGACAAAATGCTCCAACAGTTGCTCCTACTAAACTAACTGTGACGGAGTCTGGCGCCACATATATTGTATTGGAGTGGGAAGCAATTTCATTAGAGAGAGGAAGTGTCGATGGTTATCATATCACATACTACACAGACTCGGAAGCCTCAGATTCGCGGCGATCTATTAGCGCAAATGATTGTGATCGAAAGAGTCCTTGTGTGCGCAATGTTATTGGCGGGAATACGAAAATTACTCGCCTAGACGGTCTTCTCCCATACACAAACTATCGAATCTCTATATACGGTTATAACAGCGGGGGCAGAGGCCCAGAAGCCAGTACATCTTACAAAACAGATCCAGACTTGCCAGGTATCCCGGAAGTCGAAGTTGAAGCATTTGCGAGATTTGTCGAAGTTTTTTGGAAGAAACCTAAACAGCCTAATGGCGAGATTACTGGATATGAAGTAGAAATTGATAAGGACGCTGATCCCAAGGTCGTAACTCTTGGTCCGACTTCTATGGAGCACACGTTCGGTGGATTGGAACCAAACAAAAGTTATGTTGTATCTGTCCGAGCAAAGACTGCCGCTGGATTTGGGCTGAAAAAAAGATACCATGTTCAAACCAAGTTACCTATACTTCCTGGCAAACCTAAGATTCCTATAGTAAAGGGCATCGGAGAAGATGGAGTAAACGTGACATTCCGAAGAAATAAATCAGGAGGATTCCCAGAAAAATTTATTGTTCGCTACCGTATTAAAGATGGAGGTGATTGGAATGAAACAGATCCTGTTCCATTGTACGGGCCAAACAGCAAACCCTATGTGGAGATTTTCGGGCTAGATAATGATAAGGAATATGAAATATCGACGTTTGCTGTTAACGAAAAAGGTCCAAGTGAAACGAGCGATATTGAAACTGTGAAACCAGGACAGGAGGAGGGTGAAACTCCAATAGCTCAAAGCAGCCCAATTTACAAACGTTCATGGTTCGTGGCGATGGTGGTTATTGTCTGTCTACTCCTCATCTTGCTTCTCATTGCTTTACTCATCACAAGAAAGAGAGGCGAGAGGTATCCTGTTGGTAAACGTGAGAAAAAGAGAGCTGGAATTCTGGACGTTGGCGAAGAACCAGATTACAACATGTATCCGATGAAACCAGCAAGACCAAACGGTAATGGTATAAGTAGGCAAGACAGTGGAGTCTCCGATCCAAACCGTGATCCAGATCGTGACAGCTTAGACGATTACGGAGAAGATCGCTTTGATGAAGACGCGGCTTCTTTGATTGGCGCATATAATGATGACAGAAGACACAACAAGGCTGTTGATGAACCGGAATTTGTATAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q7ZW34	Contactin-5 OS=Danio rerio OX=7955 GN=cntn5 PE=2 SV=1
Q98902	Neural cell adhesion molecule L1 OS=Takifugu rubripes OX=31033 GN=l1cam PE=3 SV=1
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF13882	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR026966	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001764	Biological Process	neuron migration	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0044295	Cellular Component	axonal growth cone	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06756	NRCAM; neuronal cell adhesion molecule	-	Cell adhesion molecules	ko04514	deepkoala