Gene detail

Detailed information of XP_029191213.2 in Acropora millepora

Genomic Location: NC_058071.1:12862155...12870808
NR annotation: XP_029191213.2, chromatin assembly factor 1 subunit B-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_029191213.2

ATGAAGTTGAACACTCCAGAGATCGCTTGGCATGAGAAGAAACCAATCCTTGGCATTGATTTCAGCAAAGTGGGATCAAAATGTCGGCTGGCCTCCGCTGGAGCTGACAACGATGTGAAAATCTGGTTGATTACGTGTAACGAAGATCAGCAGACTAAGATCGAATTTTTAGCTAATTTGAATCGACATACGAAAGCAGTGAATGTCGTGCGGTTTTCACCAAAAGATGAAATTCTTGCATCTGGAGGAGATGATGCAACAATTATTTTATGGAAGCTCAATAATAATTCTGATCATACTGCAAATGCAACACTTCTGGAGGATGATGATTTGCAAAATAAGGAGTCTTGGACTTTTCACAAATCTCTTAGGGGTCATTTAGAGGATGTGTACGACATTTGTTGGTCTCCTGATGGAAATAATTTAATCTCTGGATCTGTTGATAACAGTGCAATAATATGGGACAGTACAAAAGGTACCAAGCTTATGATTTTGAAGGATCATAAACATTATGTTCAAGGTGTGAGCTGGGATCCACTAGGTCATTATTTGGTTACCAACTCTAGTGACAGGAGTTGCAGACTTTACAATTCCAGTTCATATCGTTGCTGTTATAATATATCCAAGCTGCTTTTGAATGGAATGCAAAAGAGTACAGAGAACATGGAATCCTTAAAGCAAGGAAAAATGTTCCATGATGAGACTATGCCATCTTTCTTTCGCCGACCAAGTTATTCCCCTGATGGTTCTTTGCTGATTGTCCCAGCGGGTCGTATTGAAGTTGGTGATCAAGTGGTCAATGCAACTTATGTGTTTACACGAGCATCTCCAAATAAACCAGTACTCTACCTTCCTAGCCCTCAGAAGGCTTCTGTTGCAGTGCGATGTTGTCCAATACTGTTTGAGCTCAGGCAAGAAAATGGTGTTAAGGGTGATGAAAATAATGTAAAGAGTTTATTCAAGTTGCCATATCGCATGATATTTGCAGTGGCAACTTTGGATTCAGTGTTATTGTATGACACCCAACAAGTAGCTCCATTTGCTTTCATTGGCAATATCCACTATGCAGCCCTAACTGATGCTACTTGGTCCCATGATGGATCTATGTTGGTGGTGTCGTCGTCGGATGGCTACTGCTCCATAATTCACTTTAAGGGAGGAGAGCTTGGCAAACCTTACCACCTTACAGTAGCACAGGTGTTGGAAAGGAGCAGTTCTAAAATGGGACAAAATATTGATGATCCAGGCAAAAGGAACATTGGGCCAGTCACAGAGAAGCCTGGTAACGATGAAAGGAGCACGGATAAAATCACTATGTCAAATGGCAAAAAGGAACCTGTTGCAGGCAAGATAAGCATGTTTACAGTGCCAATGAAAATTACACCAACCAAACCAGCCGTGAAATCAGCAAGAAAGAGAATCCCCCTGACCCCTGTGCAAGAACAACAAGCTGGTACTTCACCACTCACATCATCTCCAAATCAGGCACATTCCACTTCTGCTGCAAGAAATTCAAGCACTGGGGCTGTAACTATCAATAAGATAACTCCACGGCGAATTCCCTTAGTTCCAGTGGGTGTTAAGCAAGCTGCTACATTGTCAAGCGATGTAAAAGTTACAGACTGGAATGTCCGAGCAACAAATCAATCCACGATGCCCGTCGAAAGTCATACAAAAGGCAACGCACCCATGGAAATAGCAGATTGTTCTTCACAGCAACAACCAACTCTGAAGGAGACATGTGCCACAACTGTTCCAAGTCCCCAACAACAATTGGTTCACTTGACCACCGCTGAAGCTGAGAAAAGTAAAGCAACCCAGTCACCATGTGCTATCTCTGTTAAAAGCAGCGCTTCTAACCAAAGAGTAAAGGTCAGCCAAGCACAACGCCGACACGTTGCATTAACAACTATCATTTCTCAAGAAGGTGACAATGCAAGCATTCATGATCTCCATGAGGATGCAAAAACATTGCCCATCCAGATTGCGCCAAGGAGACCAATACCTTTGGAACCTAAAGTAATCGTGCTAGACGACTAG

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5R1S9	Chromatin assembly factor 1 subunit B OS=Gallus gallus OX=9031 GN=CHAF1B PE=1 SV=1
Q13112	Chromatin assembly factor 1 subunit B OS=Homo sapiens OX=9606 GN=CHAF1B PE=1 SV=1
Q9D0N7	Chromatin assembly factor 1 subunit B OS=Mus musculus OX=10090 GN=Chaf1b PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045145	Family	Chromatin assembly factor 1 subunit Cac2/CHAF1B/FAS2	Interproscan
IPR001632	Domain	G-protein, beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15271	CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan
GO:0006335	Biological Process	DNA replication-dependent chromatin assembly	Interproscan
GO:0033186	Cellular Component	CAF-1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10751	CHAF1B; chromatin assembly factor 1 subunit B	-	Chromosome and associated proteins	ko03036	deepkoala