Gene detail

Detailed information of XP_029191734.2 in Acropora millepora

Genomic Location: NC_058077.1:14729285...14747417
NR annotation: XP_029191734.2, LLGL scribble cell polarity complex component 2-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_029191734.2

ATGTTCAAGTTCTTTTCAAGGACACGGGATAGGAGTTCTGGACATCTGAAGGATAAACTCGGCAAGGATTTGTTTCTCTTCAACAAGGCCGTAGAGCATGGATTTCCACCGAAACCTTCAGCAATTGCACACGATCCAGAGCTTAATTTGTTGGCTGTAGGAACAAGCAATGGGCTGTTAAAAATCTATGGCCGACCTGGAGTTGAACTCTCAGCTCGTCATCAGGAAGAAACAGTCATCCAAGAATTGCATTTTCTGCCAGAGCAGGGACGTATCATAAGTGTTTGTGATGATGGAGAGCAGAACACAATCCATCTTTGGGAAGTAAACAAGAAAGATGGCAAATCTGTTTTGGAGGAAGTGAAGACATGCACTTTAGAGGGGAGACTGAAGAAAATCTCTGTATGTTTTCTGTCCATGAAAACCAATCGTTTGTATCTTGGTACTGAGGGTGGTAATATCTATCTGCTGGACATTAACTCATTTGAGCTCCAGGAGTATATCATTTACCAAGATGTTGTCATGCAGAGTGTTCAGGAAGAAAGCAAGACAAATGCAGGTTCTGTGGAGGCCATTCAGGAACATCCTGAGGATGCAAACAAGATTTTGATTGGCTATAAGAAAGGCCTGGTTGTGTTGTGGAATCACGAGAGGTGTAGTGTGCAGGCAGCATTCACGGTCCAATCCTCTGACCAGTCGCAAGAAGTGGAGAGCGTCAGCTGGCATTCGGATGGAACTAAGTTTATCAGTGCTCATTCTGATGGCAGCCTAACCAAGTGGACAGTGGAAGGAAGTCCAGAAATACCTAAGGCAGTGACTCCGCTGGGTCCCTTCCCTTGCAAAGCAATAACCAAAGTGGAGTGGAGTAGTACCTCAGTTTTCTTCAGTGGTGGAATGCCTCGTGCGAGCTATGGCGACAGACATTGTGTCTCTCTTATCCAAGATGCAAATTTAGTTGATGGTGGCGACAACACTCCTCAAGTTGCTTTTGACTTTTCATCACGAGTTGTGGACTTTTTCACAGTGAAAAAAGGAGATGAACCAGCATTTTTGGTGGTGTTGTGTGAGGAGGAATTGGTTGTCATTGACCTGAAGACCAAGGAAACAGGGTTTCCAACATTCATGAAGCCTTATTTGGTCTGCCTGCACTCTTCTCCAATCACTTGTTCATCTCACAGCCATAACTGTCCCACAAGCTTGTTTCAGCAAATAGAAAAGGCAGGAACAAAACAACTAGAAAGTGACTTTTCACAGGAGATTTGGCCCATTTCAGGTGGAAAAACACTAGTGGAAGATTGTGACACTAAGGACATTCTTGTCACAGGACATGAAGATGGATCTGTCAACTTCTGGGATGTTTCCCAACTTGAAATGCGGCTCATCTACACCCTTCAGACAGCCAAATACTTTGTTGGAGAACACGAAGGTAATGATTCTGAAACAAGGGAGACAGAAGAGGAAGTATGGCCTCCATTCAAGAAAGTTGGCAATTACTGCCCATACTCTGATGATCCCAGATTCGCTGTGACCAAGATAATGTTCTGCTCAACATCAAAGACCCTGACAGTTGCTGGAAATGGTGGTCAAGTCCTTATTTTTGATCTCTGTGAAGAGGAATCTAGTGTGGACGTGCAGATGACTGAAATCGACTTTACAGAGGACAAGGAGAACTTCAAATGGAAAGGCCATGGGCCATTGCTTCCCAAGGAAGGTTCAGTATCAATTCCAGCTGGTTTCAAGCTACAAACAGGTCTCCAGCTGATTCCAGCAGCTCCAGTTAGTGCACTTTCAGTGGAAACAGGCTGGGGACTTCTGGCAGCAGGAACTATCCATGGTTTTATCTTGTACGACTTTATGAACAAGAAAACTGTCACAACAAAATGGACTGTCAGCCAAGAAACTGACAGTGGAGAACAATTATCAAGAAAGAAATCTCTCAAAGAGAGCATCAGAAGGTCATTCCGCCGTCTCCGTTCACGCAGAGGATCACGTGGGGGTGCAGAAAGAACCCCATCAAAGGAAGGAGAGGCACCTGCTTCACCTGCACAAGAGGCTGTTGGATCACCAGTGTCAAGACTTGTAGAGGAAAGCCGTGTGGATGAGAGTGTGCTGAGCATGGTGCGCTGCTTGTACTTTGTGGACACCTTTGTTAAGGATGGAGTACACCATTGCCCGTCACTGTGGGCAGGTACAAATGCTGGACACATCTATTTGTTTTACCTTACTGTCCCTGGTGCTGGAAAACGCTCTGAAGATGAGGTTCAGGCTGAGATGGGCAAAGAGATTAAATTAAAGCACAAAGCCCCAGTCGTATCAATATTTGTTGTTGATAAAGATGGAATGCCACTGTTTGGAGACATCATGCAGGATCATGGCAAAGAAGCAGACATGAGTGGAACACATTCATTAGTGATATGCTCTGAGGAACAGTTCAAGGTGTTTAGCTTGCCGCACTTGAAGGCTCGCAACAAAGAAAAGCTCACAGCAGTTGATGGGTCAAGAGTCCGAAAGATCGGTCTGATCAATGTCAGAAGCAAGAATGATGACTCTGACATGGTTTATCATTGTCTGGCATGTGTGAGCAATCAGGGTGACTTGATTGTCTATTCTGTTCCGAATCTTAAAGTGCAGGTGAAGGCATCAGCCATGAGAAAGTCAGATGTGGATGCCATAAAGTCCTTGGTGTTCTCTGTCAGTGGGCAAGGATTCTATCTCAGTTCACGCAGCGAGATGCAGAGATTCACGCTATCGGCGACAGATTTATTAAAGCCAGATTGTGTCCTGGAGCTTGCTGAGGGAATGAGACCAGCAGAACCTGAAGAGGTTATCCCGGAAGAAGAAAAGAAGGAGCGGAAGAGTTCCTCATCAAGCTCATCCTCATCGTCTTCGTCTGATGACGACAAGAAGAAAGCCAAAGAGGAGGCTTCGGCGGCTGCTGCTGCTGCTGTGACAGCAGATGAAGTTGTCCTTGAAGTGGTTGAGGAAAAGAAAGAGGAAGCTGAAGAGAAGAAGGAGGAGATTGAAGACAAAAAAGAGGAAGCTGAGGATGAAGGAAAAGAGGCTGCTGTTGTTCTTCCTGCCACAGATGAAGGAAGTTCATCCGTAACAGAGAGGGTGGTTATCTCGGAGAAAAGATCCTACACTCATCAGTCATCCACATCTGAGGGTGGCAAAAACCCAGACGAAATTACTGGAGATGAATTCAGCAGCTTCTCTTCCACCGTGGAGAGTTCATCATCTTCATTTACCACAACCACTCGTGTTGTAACATCTAAAGTTATCACTTCCTCATCCACAACAGAGCGAATAATTCTGTCAGATGGGACTAAAATGGAGGCTCTTGAGAATGGTGAATCGGAAAAGCTTATGTTGAATGACTCTGACCTTAAAAAAGCTGCAGAGGAGCTGATGAATGATGCTCATGATGAGGTTCAGCAAGCTTCCAGTTGA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q6P1M3	LLGL scribble cell polarity complex component 2 OS=Homo sapiens OX=9606 GN=LLGL2 PE=1 SV=2
Q80Y17	Lethal(2) giant larvae protein homolog 1 OS=Mus musculus OX=10090 GN=Llgl1 PE=1 SV=1
Q5RCX2	LLGL scribble cell polarity complex component 2 OS=Pongo abelii OX=9601 GN=LLGL2 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08366	LLGL	LLGL2	Family	Interproscan
PF08596	Lgl_C	Lethal giant larvae(Lgl) like, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR013577	Domain	Lethal giant larvae homologue 2	Interproscan
IPR013905	Domain	Lethal giant larvae (Lgl)-like, C-terminal domain	Interproscan
IPR000664	Family	Lethal(2) giant larvae protein	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10241	LETHAL 2 GIANT LARVAE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008593	Biological Process	regulation of Notch signaling pathway	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0030866	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0032878	Biological Process	regulation of establishment or maintenance of cell polarity	Interproscan
GO:0045159	Molecular Function	myosin II binding	Interproscan
GO:0050708	Biological Process	regulation of protein secretion	Interproscan
GO:0051294	Biological Process	establishment of spindle orientation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06094	LLGL; lethal(2) giant larvae protein	-	Membrane trafficking	ko04131	deepkoala