Gene detail

Detailed information of XP_029192375.2 in Acropora millepora

Genomic Location: NC_058072.1:23440993...23452848
NR annotation: XP_029192375.2, cyclin-T1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_029192375.2

ATGGCGACCAGTGCAGTGAGTACCACAGACCGGTTTTATTTTTCGAAAGAACAACTTGAAAATACGCCGTCCAGAAAGAATGGAGTGGAACCAGAGAAAGAGCAAAGCTACAGACAGCAAGCAGCTACTCTAATTCAAGACATGGGACAACGGCTTTCTGTAAATCAGCTGACGATTAATACAGCAATTGTTTACATGCACCGGTTCTACATGTTCCACTCATTCAATAAATTCCATCGAAATGCATTGGCCCCATGCTGCCTATTCCTTGCAGCTAAGACTGAAGAACAACCACGAAAACTAGAACATGTTCTTAAGGTGGCTCATGCCTGTCTGCATCGCGATGGCCCTCAACTTGATCCGAAAAGTGAGGAATACCTGCAACAGGCTCAAGACTTGATTGAAAATGAGAGCATCCTTTTGCAAACCTTAGGATTTGAGATTACCGTTCATCATCCTCACACTTATGTTGTCAAGTGCATCCAGTTGGTACGAGCAAGCAAGGACCTTGGCCAGACCTCGTACTTCATGGCTACTAACAGCCTTCACTTAACCACACTATGTCTTCAGTACAAACCGCCTGTTGTAGCTTGTGCATGCATCCATCTTGCATCAAAGTGGTCCAACTGGGAGATTCCTCAGTCGAATGATGGAAAAGACTGGTGGGAGTACATCGATCCTTCAGTCAACAAGTCGATGTTAGATGATATCGCTCAGGATTTCCTCAAAGTCATGGAGAAGTGTCCCAACAGACTTAAAAGGAAGATCAACACTGTGACAAACCTTAAGGGTGTATCACACAGCAAGATGTCGAAAGGAGAATCCACCAGTAGTCGAGCATCGAGTTCGTCCGCGGCGAGTGCTTCCTCAACCAGCCATGGTCTTGTCGATGGAGCTCAAAATGGATATTCTTTTTACGATGTACCTTTCTCAAATGAGTTGGATGGGAAAGCTTTGCATAGGTCCAAATCTGATAAGGACCGAGAGAGAGAGAAAGAAAAAAGGAGGGAATCGTCTCTTGGTAAACTCAAACCTCTGCCAGTTGCTACCTCAACAGTAACGGCATCGTCAACCACAGGAGCGAGTTCGTCGAATTCGAACACAGTGTTACCACCTTTGCCTCCGCTGCCTCCACTTACATCGAAATACGCATCTCTTCCTTCGGCTAATCCTGTTCAGTCAAATGATGTCAAAGGTTCGTCTGCAGCATCGAGTTCGGCGAAGGATTCATCGTCTTCAAGAGGGAAACACCGACATCATCCTCACGATGAATCGCAGCCTGCTAAGAAACACAAATCTTCACACTCTCACGCACAAAGATCGCATTCATCTTCGTCTTCGTCGTCGCATCGCAAGCCGAGTGGTTCGTCGCAGTCTTCGGATTCCTCACCATCTCCTAGCCTCAAACACGGTCATTCATCGGCTCACAAGAGTTCAAGCCACTCTGCGAAACTCTCGAATCCTTCCCACCATCACTCTCAAACTGGTCTGTCGTCGCAACCTGCGCATGGATCTTCTCATTCCTCGAAAAAACCACACCCAACACCGCATCCGCCAAGTCACAAGTCTTCGTCGTCGTCATCGTCCTCGCAGCATCATGGACACCACGGGCATTCTTCTTCTCATCGGCCACCTTCGGCGTCGTTGGAATCCTCGAAGAAACACTCGAACGCCGTGCGATCGGGGGCACCGATTTCATCGCAGCCAGCTCCTACCGCGAGACAACTGACCCCTCCACCACCCCCTCCCCCGCCTCCGTCCACGATGGACTTGGGCTTGCTTTCGTCGTTGAATACGCCGGGAATGTTAGGCGTCTTTCCCAGCGCGGAGATGCAGGCAATGCAACCGCCGATAACTATGCAATTTGGGGGTCATTTTATGCCTCCCATGTTTTCGTCCAATTCGAGGCCATCTATGCTGCAGGGCGAGGCACCTCCACCACCACCCCCCGAACCAGAACCAGCGGCACCTCCACCACCACCCCCTCCGATGCCATAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q9XT26	Cyclin-T1 OS=Equus caballus OX=9796 GN=CCNT1 PE=1 SV=1
Q7TQK0	Cyclin-T2 OS=Mus musculus OX=10090 GN=Ccnt2 PE=1 SV=1
Q6T8E9	Cyclin-T1 OS=Bos taurus OX=9913 GN=CCNT1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00134	Cyclin_N	Cyclin, N-terminal domain	Domain	Interproscan
PF21797	CycT2-like_C	Cyclin-T2-like, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013763	Domain	Cyclin-like domain	Interproscan
IPR006671	Domain	Cyclin, N-terminal	Interproscan
IPR036915	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR043198	Family	Cyclin/Cyclin-like subunit Ssn8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10026	CYCLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008024	Cellular Component	cyclin/CDK positive transcription elongation factor complex	Interproscan
GO:0016538	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0032786	Biological Process	positive regulation of DNA-templated transcription, elongation	Interproscan
GO:0061575	Molecular Function	cyclin-dependent protein serine/threonine kinase activator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15188	CCNT; cyclin T	-	Transcription machinery	ko03021	deepkoala