Gene detail

Detailed information of XP_029193630.2 in Acropora millepora

Genomic Location: NC_058068.1:3007500...3018491
NR annotation: XP_029193630.2, putative RNA-binding protein EEED8.10 isoform X4 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_029193630.2

ATGAATAGACTTTCTTCAAACTTGCACAAACTCAGAGCGCTCCATCAACAGGAACGGAGCAGAGGTTTATTTGCAGCTATATCGTATGACTCTGTCCTCGTGGAAAAACCGATTACATCAGTGCAAACTACTAACTGTCTCGGAAGTGTCATAATCCCTTTGCAATCGGGAGAGTTGTTGCAAAAAGCAAAGGAATTTTGCCGCCAAACTCGAGTGGTTGCAAATAAGTGTAAAGTGTTCGTTGGCAACGTTAGTTACAGGGTTAAGTCAAGAAAACTGAAGGAGTTTTTCAAAAATTTTGGACAAGTGATTTACGCCGAAATCATAACGGATTATAAGACAAAACGCTCTCGAGGTTTTGGATTTGTGACATTCAGCAATGAATGGGAAGCAGAGAGAGCCAAGAATTCTTCAGATGAAAAGAGAACTTTGGAAGGAAGAGTTATGGCAGTCTGTTCAGCAGAAAGAAAGAAAAGAGGAAGAAGAACATTAAACCAAGAGACTAGCTTGGAAGAGGCTTTGGAATTTTATGCTAAGAATGATGAGAGTAGAGAAACAGATGGTGTAATGGAAGATGATTCTTGCAGCAGTGACACAAAGCAGTATTCTGAGCCACCAATATTTCGACTCAATGAGGATGCCATTCTTCACATTTTCTTGTATTTAAGTGCAAAAGATAGGATACGCATTGAAAGGGTTTGCAGGAAATGGAGAGTGTTAGCAATTAAGTCATGGCGTCATACCACCCACCTTGACTTCCAAGGGGCTTTTGCTTCATTCAGAGGTGTTGGAGGTCTTACTGATGAAATTCTGTGGTCCATTTTGAGACGAGGTTGCCATAACCTGAAGTCATTGGATTTGTCTCTTTCACCTCATTTCTTGACTGATTTTTCAGTCCTTTGCATTGCAAAACAGTGCAAGTCATTGGAAGAGCTGAAAATCAGTGGTGTGGAAATGAGTACATCTTCATTGAAAGTGCTGGCTAAAGGCTGTTCAAACCTGGAGAAAATTACCCTTCAGGGTTGTTATAAAGTTGGTGAAAAAGCGCTCTGGTGGCTTTTTAAAGATTGTAAGAAACTCACATACATCAATTTACAAGGAAATAGAAGTCTTAAAGGCCAGTGTTTCTTTATGCTGTCACCAGTATGTGTGGATCTCTATCTTAAGGAATGTAATCAGTTGACAGATAAAGGAATAAACCATATTGGGAGCAACTGTAAAAATTTGAAAAACATCGACATCTCGGAATGTAGAACATTAACTGATGAGGGTATTCTTAAACTTACACAGCATTGCTGTCTGATCACGTCACTGAGATTTTCCCAAGCTGGGCCTGACATAACCAGTCAAGGATTACAGAGCATTGGGAATTTAGCATTACTAAGAGAGTTGGATCTGTCCAATAATTATGTGGTAGATGATTCGGTGTTGTACAGTATTGGAAGAAACTGTATCCATCTCATTTCTCTTAATGTGGAATCTTGTCAAGTTGGAGTCACTAATGCAGGGTTGCATAGTTTGGTGTCCTGCTATCAGCTCTCTTCACTTTCAATCAGCTATGTGAACAAGATCACCGACGAGGGTATCATTCAGCTGGCGGCTTGTGGATCTTTGGAGCGAGTTGTAGCCCGAGGGTGTACTGGGCTCGCTGATATGTCTATCGAAAGTCTTTTAAAACACTGCCGTAACTTGACGGTGTTGGATGTTAGCGGATGTTCTGGTATCACAAACTGCTCTCTTGAGCTATTCACTTTGTACTATGGAAGAGGCGATCGACCATTTCTTACCTGCACATTGGGAGGTACAGCAGTGGAGGAGAACGAAATCTTGAGAGTGCAGCCGACGTTGTGTCAGTGTCAGCTTCTTTGCAGTGACTTTTCCATCCCTGAAAGGACTGAGGCTGTCCCTTCGTATGGCTCAGGTGCCTTCTACTGCGAGGGAAATGAGGACGATGACGACGAGTTTGACGATTTCGCTGACGATGAAGAGGACGATGACGACAAACATCTCCTTAACGTTCTTGATGACGAAGAGGTTTGGATGGCTGAAGACTCGTTGTGGTGGCGACCCGATGATGCGGTGGATTTCCTTGAAGCCGATTACCCCTCTTTATTGGCAGAGCAGCTGCACAGATCATAA

Transcript

Protein

Uniprot

Uniprot term	Description
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2
P21522	Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana OX=7009 GN=HNRNP PE=2 SV=1
Q28IQ9	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala