Gene detail

Detailed information of XP_029194399.2 in Acropora millepora

Genomic Location: NC_058067.1:28483909...28503076
NR annotation: XP_029194399.2, pentatricopeptide repeat domain-containing protein 3, mitochondrial-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_029194399.2

ATGACGGCCATTCCCAGCGACAAGTTTCTCAGAACGAAAATGGACTGGTACCTACTGCCCTGGTATTCAATGATCACGGGATCTCACGAAACCAAGATGGCGGCTCTAATCTGTGGTCGATGTGCGAGGAAGTTGCAACATCTTCGCACACCATGGCACTCATCAGTGAGATTGCTATGCGCACCATCCAGCTCGTTGTCACTTGAATCTGATGATAATCGATATATGGAAGCATCCTCAGCAAAGAAAAGAGATCCATTGGCAGTACTAAAAGTTCTAGCATCAACTGTTAAACCAGTGCCCAATCTATCAAATCCTGAGTTTGTTGAAGACATATTTCTGCTCCCAAGATCAAAAGACAAACAGGATGCATGTTTAGCAGCTAAACAATCTGGCCGTAAAGCAGCAGAATTTGTCATCTCAAGATGTCCTGGAATTTTCCCACTCAGGAAACCAAATCCTAAATGGATCTCAGGACTTGCTAAGGCCACTGACTCTAAAACTGAAAGTGATCTACAATATTTTATCAAGGCAACTGATGCTAGAAATGCTATCCTGTCATTTGAAAGACTAAAGGAACAAGGAGTTGAAGTATCTCTGGACACTCAAAATGATCTCCTCGACCTAACAGCTCAACGCTTAGGAAATATTCCAGCAAAACAGGTGTTTGGGTTTGAAGAGGTATCTCAAGAAAGTGATGAATCTTTGGGAAAAGGATTAGAGGAGGACGTTGGAGATTCAGAGTCAGATGTACTGGATCGAGAGGAGCTGAGACGTGGTGGAAAACCCTCCAAAGAAATGGATGATTATGCATTTGCCAGTGAGTGGAGGAAGGACAGCTATGCAATGGAAATGTTTCACAGCATGGAAACCAAAAATGGCAAAACTTATGAAGCTATGGTTCTTGGTTTAATGAAGTATCGATGCTATTTGGATGCTTATGACCTCTTCAATGAAATGCGTCAGCTTGGATACCAAGCGTCGTTATTCACGTATAACTTGCTGTTCAGGGCAATTTCAAAATCCCGTTCCTTTGACTCAAAATGGGAAAAAGCAAAGGAACTGATCAAAAATATGGCTGAGGAGCCTGTTGTCTTACCCAATTTGAAGACTTACAATGCGCTTATGAAGATAGCTGTTGTTAGCTCTGAAACTGATAACATGTCGCGAACTGAGATAGCGTTTGGGATTCTTCGCGATATGAAGGCAGCTGGCTTAGATCCAACCTTGGAATCTTATAATCAGTTAATCCGCGCGGAGTATATTTCCTTCTGGGAAAAGAAAAAACAAAGCAGAAGTAGTGATGATCACCGATTAAAAGGAAACCAATCCGTAAGTCCAGCAGTTCTCAATAAAATCATCACATACTTGGAATCGTTACCGAAGCTACCACCTCTCAGGGACCCGGAAGACGCTTTCTTTTTTCGATCTGCAATGAGCGCGTCCCTTCTCTGTGTGGACCCCAAACTAGCAATACGAATATTCAAGTTGTTTGAGAAACAAGACAACGCAAGTTATCTTGGCGAGAAACGTGGGCTGTTCTACTCTGCATTTCTCCTGACTCTTACATCATCTGATGCCGACTTTTCACTCATTTACGACTACTATAAAGATATCGTCCCTCAAAAATATAGGCCAAAGGATCACGTCTACACGTCATTGTTTAATTGGGCTTATAGGACCAACAATCCAGGAGTTGTTAAAAGATTTTATGATGACATGAGAAAACATCGGATACAGTTGACGGCTCAAGTGTCTACAGCAATGTTCAAAGCAATGGGAAAAGCAAACGATCCCAAGCACATCAAGACAAATGTCCAGTTAATGCTTGATGTCCTGCGTTGGATGAAGGTGTACAGAGTGGAAATCACTCATGTTCACATCACTTTGCTTATTCGGATGTTTTGCAAAAATGATCAGCTGGAGGATGCCTGGCTTTGGATATGTTCAAAAGGAATCGAGTTTCCATCCCCACATACCATGCTCTTAATGACATTTTAG

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13812	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR037387	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17659	PTCD3; pentatricopeptide repeat domain-containing protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala