Gene detail

Detailed information of XP_029202787.2 in Acropora millepora

Genomic Location: NC_058077.1:9220801...9232899
NR annotation: XP_029202787.2, DNA excision repair protein ERCC-6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_029202787.2

ATGGAAGGATCTATTGGAGCCCCTCAGAGTAAAGAAACAGAAAATGTAGATGACGATGATAAGAAATCTACTGGAAGAAAAACAAAAAGTTTTGGTATCTCAATTGACTCTGGTTTGATACCCTCCGTACCTGTTGAAAGACAAGTGTCGGTGTTAAGGAACTTAGGTGTGAATGCATTTAACCAAGATGAATTCGAAGAAGGTGTTTTGAAACAAGTTGATCAAGCCATCGCGGTAAAGGAGACAGAAGAGATAGTCAAAGGATGGGAAAAGAATCTTAAAGCAGTTGATGAAGATATCAAGGCAGTGGAAAATGAACTGGCAGAGATTGACAATGTACTAAGTGTCCTTGAGGAAAAGACTAGGACAGGATATGAGCCATGTCACAGGATCTTGCCAGCACAGAAACAGAAAGATCTCAAGCTGCGACAGTTAAAGAAACTGCAAGCGACTCAAAGATCATTGCATCACAAATTGGGAATAGGAGAGGGCAATTCACAAGAAGAATGGGATTTACAAGTTCCAGATGAAATTCTGACAGATGACGACAAGAACACAAAAAAATTGCCACCCGAAACAGAAAAGCAACAGTCTGCCAGAGATGAGCTTATCAAATCAGGAGAGATGACACCCTTTGGTGGAACATTGGGAACTGTCCGAGGGACAAACGATTCTGAAGCTGCAAAGAATCGATTAGCCATGAATGATTTGGGAACAGAAAAACCCTGCAAAGAATCTCATGTATTTAAGAATAAAAGAACAGAGAGTGATGAAAAGCAGAAATATCTCATTAGGTCATTTGCAGATGGGGCAAAAAGTGATAGCAGTGATGATAATGATGATGAATACGTCCCTGACGAGAGTGAATTGAAGTACAGCTGGTATGAGGATGATCCTGATGAAAGGGAAGGCAAAATGCTACAAAGAGGGAAGAAGTCAGCTGCAATGTGGAAACAATCTCTTAATGTTACCTACAGAGAAGACGATGCACTCACACCGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGACAGCAAGGAAAATGGGTGATACTAAACCCCTAGACGATGGAAGTGAGAAAGTGTATCGTCAAAGAATCAGGGAGTTAAGAATAAAAGAACTGCTAAAAAAGAGAAAGAACTCTCTACCTGCTGCTAATGATGATGATGATGATCTTCCTGATATGGAGTTTGACAAAGGACTGAAAATTCCTGGCAAAATTTGGCACAAGTTGTACAAGTACCAGCAGACTGGTGTTCAATGGTTGTGGGAGCTTCATTGTCAACAGGCCGGGGGCATCATTGGGGATGAGATGGGTCTAGGAAAAACAATACAGATGATTGCCTTTCTGGCAGGACTCAAGTACAGTAAAATATCAGCCAAAAAATCAAAACGTGGTAATCTTGGCCCAGTGTTGATAGTTTGTCCCGTAACTGTACTTCATCAATGGGTGCAAGAGTTTCACCAATGGTGGCCAGACTTTAGAGTGGCTGTGCTGCATGATACAGGAACTTATCAAGGCTTCAAGCAAGAATTAATCAAGAAAATATGTGGTGAGAATGGTGTGTTGGTGACGTCATTTTCTGGTATGCGTCAACACCAGGATCATCTGCTAGCTCAGAGGTTTGACTATGTGATTTTGGATGAAGGACACAAAATAAGAAACCCAGATGCAGAGATAACATTGGCATGTAAACAGTTTAGAACTCCTCACCGGATCATTCTCTCTGGATCCCCCATGCAGAATAACTTGCGAGAACTTTGGTCATTGTTTGACTTTGTATTTCCTGGCAAACTTGGCACTCTACCAGTCTTCATGACAGAATTCTCCGTTCCAATCACCATGGGAGGATATTCTAATGCTACTAAAGTGCAGGTGGAAACTGCATACAAGTGTGCATGTGTCTTAAGAGATACTATAAATCCATACCTATTAAGAAGATTGAAGAAAGATGTCAAAATGAGTTTAGATCTGCCAATTAAAAATGAACAGGTCCTTTTTTGTCGTTTGACAGATGAGCAACGTGAACTTTACCAGCAGTATTTAGATTCCAAGGAAGTTCAAGCTATTTTAGCTGGTAACTACAAGGTTTTTCCAGGTCTTATTATGTTGCGTAAGATTTGCAATCACCCGGATCTAACCTCTGAAGCTGGGTCCCTGTGGAAGGCCAAACAAGATGAACTGAAAAGTGACCTAGGGGAGGTCACAGGGGAGCAGGAACCTGACCCTGAGGAGGGATATGGAGACTGGAGAAGGTCTGGCAAGATGATTGTTGTTGATGCCTTGTTGAGCATGTGGCAAGAGCAAGGACATAGAGTACTTGTTTTTTCACAAACACAACAGGTTGGTACATTGTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q03468	DNA excision repair protein ERCC-6 OS=Homo sapiens OX=9606 GN=ERCC6 PE=1 SV=1
F8VPZ5	DNA excision repair protein ERCC-6 OS=Mus musculus OX=10090 GN=Ercc6 PE=1 SV=1
Q9UR24	DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rhp26 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR050496	Family	SNF2/RAD54 Helicase and DNA Repair	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45629	SNF2/RAD54 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006283	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10841	ERCC6, CSB, RAD26; DNA excision repair protein ERCC-6	-	DNA repair and recombination proteins	ko03400	deepkoala