Gene detail

Detailed information of XP_029206326.2 in Acropora millepora

Genomic Location: NW_025322635.1:946761...964469
NR annotation: XP_029206326.2, nucleolar MIF4G domain-containing protein 1-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_029206326.2

ATGGCGGACGGTCCGCCACTAAAGAGGAAATTTAAGGAAACCAATGAATTCTTTGTTATTCGAGCCAAAGGAGTGTCGGTTAAATTTCCAAAAGGTCAGGCGTTTGATGGCAGGGATTTTTCTAAAGCGAAAGGAAAGGAGGGGAAAATTATCGGACGGAGAGATCTAAGAAAGCAAGCGAGAATTGATAAGAAAGCAAAGAGAGCTGCTTCCTTTGCCAAGAAAAAGGAACAGTTTTCTGAGCTGCCAAACGTTCCTAGCGAACAGAACACAAACAGCAGTGAAAGCAAAGTTGCAACAAAAAGGAAAAAGAAAAGAAAAAGGAGGAAACAGTCCAAGGAAATTACTGGACCACAAGATAATTACAAGATGATTCTTGCAGAAGATAATGCAAAAGAGGACAAAGAGATTAAGAAGCTTGAAAAACTTCTTAAAATAAACAAGAAACAGAAGGTGCCCAGTAAATTCAGCTCTGATGGGCTTGATTATTTACTGGAAGTTTGTGATACTGAAATGATGACAGGTGTCATGAGTGATAAAGTATGCAGCACCAGACAAAAAAAATCTGTCTCTAAGCAGACAAGTGTCAACCAAGTTGGAAAGCCAGGTAATGATGACGTGAGCTGCAGCAAAGAAGATAATAATGATGACAATGAGGATGCAGCAGAGGGTAACAGAGAAGGCAATGATAGCAATGAAGACAGTATAAGTGATTATGAATGTGAGGAACATGAAGAGGAGGAGGATGAAGAAGACATGGAAATTGATGACAAAGTTGATGATGATGATGATGGTGTCAACAATGCAGGCAGTGATAGTGGTCATGATGATGATGCCGATGAGGACAGAAGTAAGAAGAATATTATCTTGGACTCTCAAAAGTATGTTCCTCCACATTTGAGAAAACAGGAATCTGATGCCCATCAAGAGCGCTTGAACAAAATTCGACGGCAGATGAAAGGTCTTTTGAACAGACTTAGTGAGGGAAACATGTACGTCATCAGCAATGAAATAGAAAACCTGTTTCTTCACAACAGCAGAAATGATATGAATAAGATTTTAACTGATATCATCCTGGACTCCTGTGTCTCTGTGTCTTTGATGCCTGACAAGCTTCTGATGGAACACATTATGTTACTAACCATCCTTGCAAGTCGCATTGGAATGGAAGTAGGTGCCTTCTTTATTGAAAAGCTAGCAGAGGTCTTTGATTCTTTGCATGATTGCGAAAAGGACAGTTATGGACAAGGAAAAGAATGCGTCAATGTGGTAGCATTGTTTGCATATCTCTATAACTTTAAAGTTATTCATTGCTCTCTAATTTATGACATTATTGGTCAACTGGTAGATGCATTTACTGAGCAAGATATTGAACTTCTCTTGTTTCTTCTTAAAAGTACTGGAGCTGAAATTAGGAAAGACGATCCTGGTTCCCTTAAGGACATTATTCTTCAAATCCAAGCAAAGGCTGTTGCTGCACCTAACCTGTCAAACAACCTTAGGGTTCGCTTCATGCTGGAGATCATTTCCAATCTTCGCAACAATAACTTGAAGAAAATTCCGGGATATGATCCATCAAGAATTGAACATCTCAGGAAAGTGCTGCGATCAGTCGTCAGAAATTCAAATCAAGCGGCCGACATACAAATTCAAGTCTCGTTAAAGGATCTTCTAAAGCCAGAGACCAAAGGACGCTGGTGGATGACTGGCTCGTCGTTGGACAGAATTGAAAGTGAGTTTGAAGCGACATCATTTGCTGCCAGGGAAAATACCAAACTGTTGGAATTGGCGCGTAAACAACGCATGAACACTGATGTCAGAAAAAACATATTCCTAGTTATTATGACCAGCGAGGATTATGTGGACGCATTTGAAAAGGTGCTGAAGTTAAGTTTAAAAGATACGCAAACCCGTGAAGTAGTGTATGTTCTTATTGACTGCTGTTTACAGGAGAAAACCTACAACCCCTTCTATGCTTATCTTGGACAGAAATTCTGTGATTATAATCGGAGTTATCAGGTGACTTTCCAGTTTTCCTTTTGGGACAAGTTTAAAATAATCAATGACTTAGCCGGCCACAGTGTTGATAACCTGTCTCGCCTCATGGCTCATCTCGTCGCTAGCAGAGCATTGTCTCTTTCCATCTTAAAGGGACGGGAATTTATTTCTTGCACAAAAATATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q5C9Z4	Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens OX=9606 GN=NOM1 PE=1 SV=1
Q3UFM5	Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus OX=10090 GN=Nom1 PE=1 SV=2
Q9W020	Nucleolar MIF4G domain-containing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=CG9004 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02847	MA3	MA3 domain	Repeat	Interproscan
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050781	Family	Pre-mRNA-splicing factor CWC22	Interproscan
IPR003891	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003890	Domain	MIF4G-like, type 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18034	CELL CYCLE CONTROL PROTEIN CWF22-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0042274	Biological Process	ribosomal small subunit biogenesis	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17583	NOM1; nucleolar MIF4G domain-containing protein 1	-	Protein phosphatases and associated proteins	ko01009	deepkoala