Gene detail

Detailed information of XP_029207071.1 in Acropora millepora

Genomic Location: NC_058079.1:5271278...5289894
NR annotation: XP_029207071.1, polypyrimidine tract-binding protein 1-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q00438	Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ptbp1 PE=1 SV=2
P17225	Polypyrimidine tract-binding protein 1 OS=Mus musculus OX=10090 GN=Ptbp1 PE=1 SV=3
Q8WN55	Polypyrimidine tract-binding protein 1 OS=Bos taurus OX=9913 GN=PTBP1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13893	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF11835	RRM_8	RRM-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006536	Family	HnRNP-L/PTB	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR021790	Domain	PTBP1-like, RNA recognition motif 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15592	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0043484	Biological Process	regulation of RNA splicing	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14948	PTBP2, NPTB; polypyrimidine tract-binding protein 2	-	Spliceosome	ko03041	deepkoala