Gene detail

Detailed information of XP_029207712.2 in Acropora millepora

Genomic Location: NC_058073.1:9119528...9149106
NR annotation: XP_029207712.2, DNA excision repair protein ERCC-5-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_029207712.2

ATGGGGGTGAAAGGTCTGTGGCAGCTTTTGGAATGCGTGGGACGACCAATTACACTGGAATCATTAGATAACAAAGTACTTGGAGTTGATGCCAGTCTGATTCTTAACCAATCTGTGAAAGGACTGCGTGATAAGATTGGGAATCCTGTTTACAATGCGCATCTTGTTGGTTTGTTCAGTCGATTGTGCAAGTTGTTGTATTACAGGATAAAACCTGTTTTTGTTTTTGATGGTGGAGTCCCAAATCTGAAGAAAAAGACTTTGGCAGCAAGAAAGGAGAGGAGGTTCAAAGCAATTCATGGATCCAGCAAAGCTGCGGAGAAAATCGTCAAGAACTACTTAAAGGCAAAGGCTCTAGAAACTGTCACGGGGAGAAAAAGTGCTGTTGTTCCAAGGAGCAAAAGTCCAAGAGAACCTGATGTGTTTGAGCTTCCTCCATTACCTTCAACTTCTTCTGCTGCAAACGAAGGCTTTTCAGAAGAAGATGATATTCCAATACTGGATCAGTTTCGCAGTCAACAGATGGAGCAAACGTACCAGGATCCTGCAACAATTAATATTGACTCACAAGATTTCAAGTCCTTGCCTGCAGAGATACAGCATGAACTTATCAAAGAGGTGAAAGAGGAAAGAAAGTGGAGAAACAAACATGACATGCCACGGCAATCAAGAGATTTTTCGTGCTTTCAACTGGATAGAGTCTTGAAGCGAGGCAAAATGAATCAACGACTGGATGAACTTTGTAAAGAAATGAACAGCAAAAATTCAGGAGATCTTTTAGAAATGACTTCACAGGATTCATTGGGAGAAAACTCTGATGTTAAATCCCAAAAGATCTTGTCTGAAGATTCAGCTCATTACATCCTGATTAAGAGTACTGGAAACAGCCAAGGCAATGAGAAAGATCAAGAGGAAGAAGGATTGTCTTCAAACAAAGATTTTTCTAGAGAGGGAGGATTTTTTCGTGATGGGGAAGACTGTAAAATAATCAGTTGGACCAATCCTCTCCCTAAAACAACGGTAACAGTGAAGCCTCCATGCTTTGACATTCCTGATCTTTCTGCCAGCGATTCAGAGATGTTGTCCCCTCTGGTAGATAAACCATCAAAAGACATTTTCATGAAAAGTCCTACTCAAACAAACACAACTGCTTTTGATTTCTCCTCCATAAAGGAGGATGAGGCTATTAGTAAAATTGGTTTAAATGTGGATGAGAAAGTTGAAAGAGAAAGTGATGCACCAAAACTGCAAAAACAAAATACTGACAATAATGAAATGTTGAATAGGAAAGAGATGGAAGAGTTGCAAATGGATAATATTTGTAATCAGCAAGAAGGGATAAGTCAGGAAGGAAATAAGAATGATAGTCTCCTTACTGAGATTATAACCAAAAAGAAGGAACTTGAAGACCTCATCAAGAAGTGGGAGGTCTCTAATAAATCAAAAACACCAATTAGTTTGACGGCTTCTACCCTTGATGAGGATGATGGCACAGAAGAGAGCGTAATAACACCACTTCAAAGTTCACAGGACAGACAACAGGAGTTCAAGATTGAAGGGGAAGAAACTAATCCAACCGTGTTGATTATTGGGGATGACAATGTTGATGAAGAAAAAACTGAGGGCTATGTTTGTGTCTTGGAAAATGACTCCGACGAAGGAAGCTCTGTGGAGGAAATGGCTGCTTCTCTTGAACCTTCAAAAAGTGATATTGGTTCTAAAGATGAAGTGAGTGGAAGTGGAATTCAGCAGACTGTGTCAAGCTCACAAGAAGAATCCATGTTGATTGATGGTGAAGAAAATGCAGCCATAGAGACAACAGAAATCAAAGTGGTCTCTTCTAATGCTGTCATGAATACTGAGCTCACAGACAATGCTACTGTGGCTAGCACAGAACAAAACGTCAACCCTTCCTGTTCACAAGAAGTTATTGATAGCATAGAGATTCAAGTTTCTTCAGATGAGAGTGGCATTGGTACAACTGTGGATGAACAAGAGGCTGGCCCCTCTGGGGTTCCTGTGGAATGGCAGGAAGCTACTACAGTGGAGAACTTGAAGGAAATCCAGATGAATATTGAGACTGAACAAAAAAGCCTGGCGACTGAAAAAGCACGACAGAACCGTATAGCAGCTACAGTATCCAATGAAATGTTCACTGAATGCCAGGAGCTCCTACAGTTGTTTGGTGTCCCATTCCTTGTGAGCCCAATGGAGGCAGAAGCGCAATGTGCAGCATTGGATGTACTTGGCTTAACAGATGGTTCCATCACGGATGATAGTGATATTTTCCTATTTGGAGGAACGAGAATTTACAAGAACATCTTTAATCAGAACAAACACGCTGAGTTGTATCGCAGCGATGCAGTGCAACGAGATCTTGCTTTGGATCGATCTAGTCTTATCTGCATTGCTTTTGTTACCGGCAGCGACTACACGGAAGGAATACAAGGGGTTGGTCCTGTTGGCGCAATGGAGATATTGCAGGAATTTCCTGGTGAAGGTCTAGAAGGGCTGAAAAAATTTAAAAGCTGGCATAAGGAAACTCAAGAACAAACAAAGATTCCTCAAGAAACTAAAGTTAAAAGGAAGATGCGATCTGTTGTGTTACCAAGAGATTTTCCTTCTGAAGAAGTGTTTGAAGCTTATTTGCATCCTGTTGTCGATGAATCAACGGAGCAGTTTGAATGGGGAAAACCAGATTTGCATTCTCTTAGATTGTTTGCTTCCGACAAACTGGGCTGGTCAACAGCAAGAACAGATGAGATTTTGTTGCCCGTTTTAAAACAACTTAATAAGGATGAGGCACAAATGAAGATCGATAGTTATTTCCAAGTGGCTTTTGATGAGAAAAGAAGCATAAAAAGTAAGCGAATTCGTCAAGTGCTGAATCGTACGTTCAACCCGATTGAAAAGGAAAGCAGTGAAAATCAAAGCAAAGAAGAAACCAGCAATCAAGACGAAGCTTCAAAGAGGGTGACGCGTCAGAGAAAACGACCACTGGCAACAGAAAAGGAGGCAGAGAAATCACAAGAAAAGAACGATAGTGTGAAGAAACCAAAACTATTGGAGAAGGAGAAAGGTGGTGGTGCGGGAGCGCACTTGAAGGGAAAAGAATTGATGGTTGAAATTACCCCTTTACAGCTTCCTTGTTCGTCAGGAAAAGGGCTTAATTCTTCTAAAAAAGATGCTGAAAGGAAACTCGTTGCAACTAGGAAGACGAGGGCAACAAGAAAGCTTGATTTGACTTCTCAAATTGCGGTTAACAAGAGAAAGGATTATTCTACTAGTGATAGCAGCGACAGTGATGGTTGCGATGACGTTATTTACGAACGATATGAGAGGCCTGTGCAGGGATTTCGGTCGATAAGGACACCTGGGAGGCCTGTGCAAGAAGACACTTCAACCTCTGATAGCTCAGATGATGAAAGCAATGTAGAAAATGCTTATCAAGGACCAAAACCCGTGCCTATATTTCACCGGGGGAGGAGTAGGGGGAGGGGAAGTAAGGTGGGGAGAGGTGACAAGGGAAAGAGTGTGGTTAAGGTGGAAAACCGTGACGTAGACTGTGACGATGACGGAATCAAGTCAGCGTCTGTAATCAAGAGGAGGAAAAACAGAGGCAGAGGAAAGCGAGGACGACGCTAA

Transcript

Protein

Uniprot

Uniprot term	Description
P35689	DNA excision repair protein ERCC-5 OS=Mus musculus OX=10090 GN=Ercc5 PE=1 SV=4
P14629	DNA excision repair protein ERCC-5 homolog OS=Xenopus laevis OX=8355 GN=ercc5 PE=2 SV=1
P28715	DNA excision repair protein ERCC-5 OS=Homo sapiens OX=9606 GN=ERCC5 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00867	XPG_I	XPG I-region	Family	Interproscan
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019974	Conserved_site	XPG conserved site	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR001044	Family	XPG/Rad2 endonuclease, eukaryotes	Interproscan
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16171	DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004519	Molecular Function	endonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004520	Molecular Function	DNA endonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10846	ERCC5, XPG, RAD2; DNA excision repair protein ERCC-5	-	DNA repair and recombination proteins	ko03400	deepkoala