Gene detail

Detailed information of XP_029209402.2 in Acropora millepora

Genomic Location: NW_025323111.1:24472...74880
NR annotation: XP_029209402.2, LOW QUALITY PROTEIN: lymphocyte-specific helicase-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_029209402.2

ATGTCCACCTACTCGGATTCTGATTCAGCAAAGATTGCCATTATAACAGTTCATTCTTTACTGACTATTGTCAACATCGTCGGGAACTCTCTGGTTTGTGTTGTTATAATGAAGAATACTCTCATGAGAACTTCAATAAATTACCTTCTGATGAACTTGGCCATCGCAGACATGGTAGTTGCAATATTTTTTGTCCCAAGACACCTCCTCGTGCACACTTTCAGACACCCAGAGGGGGTGGCAGGGACGTTAGTATGCAAACTGCTCACGGGAGGAAATTTGGCCTGGGTTGGAGGCACTGCCTCGATAGTCACTCTGATTGCGATAGCAACTGAACGTTACTTTACCGTGGTATATCCTCTTGGAAACAGAAGCAAGCTCACTAACGGTAGAGTAAAGGTAATTATTCTCTCATCTTGGATCATTGGTGTGATCTTCATGTCCCCAACGTTTGTGGTCAAGGACTTTGACAAAGAACGGGGCTTATGTGTTCCTATGTGGCCCGAAGATTGGGAAGGGAAAACTTACAGCCTGTTGTGGTTGCTCCTTTTGGCAGTGTTTCCAGTCTCACTGATGACGGTCTTGTACTGCAGAGTCATATACACTTTGTGGTTCCGACGTTCAAACTTAAATCCTCGACAACAGTCATCTAATAATGGCTACACTGTTGCCCAAACTGTGTCTGGAAAAGAGTCAAGTTTTCCTGACACAGTTACTGCTGAATCTACTACGGACCAAGATGCAGTTAATTTGAGTAAAAATGGAAATGAGGCAACTGATTGCTGTCACTCGTCATCTCAGAATGGTACAGTGGAGACAGATATAACCAAAGCCATGGAGGAAGAGGAAGAGTCTCTTCAGCTAGAAACCAATAAAGAACAACAAGAAACATTGCAAGAGGCCAAAAAGGAGTGGAAGAGTATGGAAGACAAACAAAGATATCTCAGATTACAGCTTCTTTTGGATAAGTCAGAGATTTACTGCAAGTTTCTTCAGGAGAGAATGGAAAAACAGAGAGTCGATGCGCAAAAGCACCAAGAAAGGATGGCAAAGAAAGAAGAGAAACAAAAAAGACAGGGTGCTAACTCTACCCAACAGGTGCCACAAATTGAACATAGAGTAACAAGAAGTGCAAAGATGAAATTAAGAGTGACATCTACACATCCTCAGGCTGATCATGTGGTGCCCTCAAGAAGGAAACAGGGAATCCGGAGAAAAGCCCAAGATTCCTCATCATACATGTTAGACAAATATCTTGATAGTGAGTCCCTTGCTAAAAGGCAGAAATTAATGGATGGAGAGAAACAGCATGAAAAAGAAACTTTTATATTGGGAACTAGCAGTGAGGATGATAAAGAGCAGGAAGTAGTTCATGGAAGTAGTGATGTGGAGAATTCATCACTTCAACCAACACTAGTGACAGGTGGATCCCTGAGGCCATATCAGTTGAAAGGTCTTGCATGGCTGAAGGGGCTTTATGAAAATGGCATGAATGGCATCCTTGCAGATGAGATGGGTCTGGGAAAAACCTTGCAGTGCATATCAATGGTGGCTTTCTTGATTGAAATGAGGGTGAAAGGACCGTTTCTTGTTGCTGCTCCACTTTCAACACTACCTAACTGGGTGCATGAATTTCACAAGTTTACTCCTAAGATCCCTGTAATACTGTATCATGGGTCACAGGAGGAGCGCCTTAAATTACGTTTGCAGATTGATAGTCTCAAGACTGTGGAAGAGAATATTGCAGCTTACCCTGTTGTGGTTACCTCCTATGAAATATGCATGAGAGATCAAAAAACCTTGCATTCTTTGGAGTGGAAATATTTCATTGTTGATGAAGGCCACCGGATTAAGAACCTGAACTGCAAGCTTATAAAAGAATTGAAGACCTACAACACAGCTAACCGGTTACTGTTAACGGGTACCCCATTGCAAAATAACCTGTCTGAACTATGGTCACTGCTGAATTTTCTGCTGCCTGATATTTTTGATGACTTGGATAGTTTTCAGAAGTGGTTTGATTTTAGAGCTATTAATGAACATGGTGGAAGTGAGAGAATCATTGAACAAGAGAGGGAGCATCAAGTTTTAGAGAGGCTTCATGCTATCCTTACACCATTCTTGTTGAGACGTCTCAAGAGTGATGTTGCGTTACATCTTCCTCCAAAGAAGGAAGTTTTAGTTTATGCTCCTCTGACTCAAAAACAGGAAACTTTCTACAAGGCTGCTTTGGATGGAACCATTCTTGACCTTGTTGGTGACAAGAGGGAAGACCTTCCGTTGGAACTAAGTGAAACTGGTCGACCAAAAAGGAAAGGCAGACAAGATATCAGTTACAAACTTTTTTTTAGTGACAGTATTGATGAAGAGGACCTGCAGGAATTGAGTGGAAAGCACAATGAAAGGAACATGCCTGGCCCTAGTGCTCCCAGCTCAGTGTTAAATATTCGCATGACAAATATCTTGATGTTGCTTAGAAAATGTTGTAACCATCCATATCTGTTAGAATGCCCATTAGAGGAAGGTACATTGCTACGCAAGGTTGATGAAGACTTGGTGAATTGTAGTGGTAAAATGTTGCTTCTTGATCGAATGCTGCCATCACTGAAAGAAGGAGGTCACAAGGTGTTACTTTTCACGCAAATGACCAAGATGATGGATATAATTGAAGATTACTGTATTCTTCGAAACTATGGTTATTCAAGGCTGGATGGAACAATGAAGGTGTCGGACAGACAGGAAGAGATGAAAAAATTTGAAGTGGATCCATCAGTGTTTGTATTTTTGATAAGCACCAGAGCTGGTGGTCTTGGTCTTAACTTGGCTGTGGCAGACACAGTTATTATATATGACAGTGATTGGAATCCACAGGTGGATTTACAAGCTCAGGATCGCAGCCATCGTATAGGACAAACCAGGCCTGTTGTTGTCTATCGTTTTGTTACTGCTAACACAATCGATCAGAAAATTGTTGAGCGAGCATCAACTAAGCGAAAACTGGAAAAGATGATCATTCACAAAGGGAAATTCAAAGGAAGTAAGGACACGTCGGTTATTGACGCAAGAGAGTTGCGGGACTTACTGATGTCACGCGATCATGACAGTGTGGTAAAAAGTGATGGTTTAGTTATTGGCGACAAAGATTTGGAAGCGCTGCTTGACCGAAGTGATCTCCATTCAAAGTTTGATGCCTCCAGCTCAAATGCAAACCTGAAGCATCACTCACAGCAAAGCAAGAACACAGAATTTTTCCGTGTATTGGACAATACTCTTTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q9NRZ9	Lymphoid-specific helicase OS=Homo sapiens OX=9606 GN=HELLS PE=1 SV=1
Q60848	Lymphocyte-specific helicase OS=Mus musculus OX=10090 GN=Hells PE=1 SV=2
P43610	Uncharacterized ATP-dependent helicase IRC5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IRC5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47161	LYMPHOID-SPECIFIC HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005721	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006306	Biological Process	obsolete DNA methylation	Interproscan
GO:0006346	Biological Process	DNA methylation-dependent constitutive heterochromatin formation	Interproscan
GO:0010216	Biological Process	obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation	Interproscan
GO:0031508	Biological Process	pericentric heterochromatin formation	Interproscan
GO:0046651	Biological Process	lymphocyte proliferation	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19001	HELLS, DDM1; ATP-dependent DNA helicase	-	Chromosome and associated proteins	ko03036	deepkoala