Genomic Location: NW_022257957.1:11517...64378
NR annotation: XP_031549703.1, uncharacterized protein LOC116287202 [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families
| CDS |
| XP_031549703.1 |
| Protein |
| XP_031549703.1 |
| UniProt accession | Description |
|---|---|
| D3YXG0 | Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1 |
| Q96RW7 | Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2 |
| F1NWE3 | Receptor-type tyrosine-protein phosphatase S OS=Gallus gallus OX=9031 GN=PTPRS PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000060 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07679 all species → | I-set | Immunoglobulin I-set domain | Domain | Interproscan |
| PF00047 all species → | ig | Immunoglobulin domain | Domain | Interproscan |
| PF00754 all species → | F5_F8_type_C | F5/8 type C domain | Domain | Interproscan |
| PF13927 all species → | Ig_3 | Immunoglobulin domain | Domain | Interproscan |
| PF00102 all species → | Y_phosphatase | Protein-tyrosine phosphatase | Domain | Interproscan |
| PF00041 all species → | fn3 | Fibronectin type III domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007110 all species → | Domain | Immunoglobulin-like domain | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR000421 all species → | Domain | Coagulation factor 5/8 C-terminal domain | Interproscan |
| IPR000387 all species → | Domain | Tyrosine-specific protein phosphatases domain | Interproscan |
| IPR036179 all species → | Homologous_superfamily | Immunoglobulin-like domain superfamily | Interproscan |
| IPR013098 all species → | Domain | Immunoglobulin I-set | Interproscan |
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR016130 all species → | Active_site | Protein-tyrosine phosphatase, active site | Interproscan |
| IPR003599 all species → | Domain | Immunoglobulin subtype | Interproscan |
| IPR029021 all species → | Homologous_superfamily | Protein-tyrosine phosphatase-like | Interproscan |
| IPR000242 all species → | Domain | Tyrosine-specific protein phosphatase, PTPase domain | Interproscan |
| IPR003006 all species → | Conserved_site | Immunoglobulin/major histocompatibility complex, conserved site | Interproscan |
| IPR013151 all species → | Domain | Immunoglobulin | Interproscan |
| IPR003598 all species → | Domain | Immunoglobulin subtype 2 | Interproscan |
| IPR013106 all species → | Domain | Immunoglobulin V-set domain | Interproscan |
| IPR003595 all species → | Domain | Protein-tyrosine phosphatase, catalytic | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24543 all species → | MULTICOPPER OXIDASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016311 all species → | Biological Process | dephosphorylation | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004725 all species → | Molecular Function | protein tyrosine phosphatase activity | Interproscan |
| GO:0006470 all species → | Biological Process | protein dephosphorylation | Interproscan |
XP_031549703.1.Transcript abundance of XP_031549703.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism | 5 | 5 | 3.21 | 6.28 | |
| Tentacle | 4 | 4 | 1.71 | 2.55 | |
| Mesentery | 3 | 2 | 1.56 | 3.18 | |
| Acrorhagi | 3 | 2 | 2.04 | 4.31 | |
| whole | 2 | 0 | 0.00 | 0.00 | |
| whole organisim | 1 | 1 | 6.60 | 6.60 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR2437124 | whole organism | whole organism | not recorded | not recorded | SRP063756 | 6.28 |
| SRR3210696 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 3.53 |
| SRR3193648 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 2.30 |
| SRR3206038 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 2.04 |
| SRR4696535 | whole organism | Whole Organism | not recorded | not recorded | SRP092287 | 1.90 |
| SRR6282389 | Tentacle | Tentacles | not recorded | not recorded | SRP124815 | 2.55 |
| SRR4677522 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 1.56 |
| SRR4677495 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 1.54 |
| SRR4677502 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 1.19 |
| SRR4677492 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 3.18 |
| SRR4677518 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 1.51 |
| SRR4677488 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677507 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 4.31 |
| SRR4677512 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 1.81 |
| SRR4677515 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR3193284 | whole | whole | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3216075 | whole | whole | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3207346 | whole organisim | whole organisim | not recorded | not recorded | SRP070917 | 6.60 |
Source: CnidoSite RNA-seq expression matrices (ATENE_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Actinia tenebrosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 6 | XP_031566923.1 | 0.885797088473654 |
| Negatively correlated | 8 | XP_031567901.1 | -0.714513912560969 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Actinia tenebrosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
