Gene detail

Detailed information of XP_031551663.1 in Actinia tenebrosa

Genomic Location: NW_022258626.1:430...6241
NR annotation: XP_031551663.1, thioredoxin domain-containing protein 17-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQM5	Thioredoxin domain-containing protein 17 OS=Mus musculus OX=10090 GN=Txndc17 PE=1 SV=1
Q6DBT3	Thioredoxin domain-containing protein 17 OS=Danio rerio OX=7955 GN=txndc17 PE=2 SV=1
Q5REA8	Thioredoxin domain-containing protein 17 OS=Pongo abelii OX=9601 GN=TXNDC17 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008210 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06110 all species →	TXD17-like_Trx	Thioredoxin domain-containing protein 17-like, thioredoxin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR045108 all species →	Family	Thioredoxin domain-containing protein 17-like	Interproscan
IPR010357 all species →	Domain	Thioredoxin domain-containing protein 17-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12452 all species →	42-9-9 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0047134 all species →	Molecular Function	protein-disulfide reductase (NAD(P)H) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_031551663.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031551663.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

16TPM > 0

6Conditions

133.5Max TPM

65.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	3	38.74	71.30
Tentacle	4	4	104.66	133.52
Mesentery	3	3	44.41	48.69
Acrorhagi	3	3	64.17	77.93
whole	2	2	94.00	95.25
whole organisim	1	1	51.11	51.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	71.30
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	69.43
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	52.98
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	0.00
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	0.00
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	133.52
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	122.18
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	108.14
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	54.81
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	48.69
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	45.72
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	38.81
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	77.93
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	61.84
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	52.73
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	95.25
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	92.74
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	51.11

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.