Gene detail

Detailed information of XP_031551908.1 in Actinia tenebrosa

Genomic Location: NW_022257978.1:28486...31031
NR annotation: XP_031551908.1, proteasome subunit beta type-1-A-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DRF3	Proteasome subunit beta type-1 OS=Danio rerio OX=7955 GN=psmb1 PE=2 SV=1
Q9IB84	Proteasome subunit beta type-1-A OS=Carassius auratus OX=7957 GN=psmb1-A PE=2 SV=1
Q9IB83	Proteasome subunit beta type-1-B OS=Carassius auratus OX=7957 GN=psmb1-B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007324 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00227 all species →	Proteasome	Proteasome subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023333 all species →	Family	Proteasome B-type subunit	Interproscan
IPR016050 all species →	Conserved_site	Proteasome beta-type subunit, conserved site	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR001353 all species →	Family	Proteasome, subunit alpha/beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32194 all species →	METALLOPROTEASE TLDD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005839 all species →	Cellular Component	proteasome core complex	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02732	PSMB1; 20S proteasome subunit beta 6	EC:3.4.25.1	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031551908.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

14TPM > 0

6Conditions

62.0Max TPM

36.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	4	35.40	61.97
Tentacle	4	4	51.13	56.51
Mesentery	3	3	47.82	57.54
Acrorhagi	3	2	33.84	61.56
whole	2	0	0.00	0.00
whole organisim	1	1	36.31	36.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	61.97
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	47.26
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	40.66
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	27.09
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	0.00
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	56.51
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	55.41
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	47.96
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	44.65
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	57.54
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	44.69
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	41.23
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	61.56
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	39.95
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	36.31

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.