Genomic Location: NW_022258692.1:99165...118528
NR annotation: XP_031551997.1, metabotropic glutamate receptor-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families
| CDS |
| XP_031552002.1 |
| Protein |
| XP_031552002.1 |
| UniProt accession | Description |
|---|---|
| P91685 | Metabotropic glutamate receptor OS=Drosophila melanogaster OX=7227 GN=mGluR PE=1 SV=2 |
| P48442 | Extracellular calcium-sensing receptor OS=Rattus norvegicus OX=10116 GN=Casr PE=1 SV=1 |
| Q1ZZH1 | Metabotropic glutamate receptor 3 OS=Macaca fascicularis OX=9541 GN=GRM3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000269 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07562 all species → | NCD3G | Nine Cysteines Domain of family 3 GPCR | Family | Interproscan |
| PF00003 all species → | 7tm_3 | 7 transmembrane sweet-taste receptor of 3 GCPR | Domain | Interproscan |
| PF01094 all species → | ANF_receptor | Receptor family ligand binding region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017978 all species → | Domain | GPCR family 3, C-terminal | Interproscan |
| IPR011500 all species → | Domain | GPCR, family 3, nine cysteines domain | Interproscan |
| IPR028082 all species → | Homologous_superfamily | Periplasmic binding protein-like I | Interproscan |
| IPR001828 all species → | Domain | Receptor, ligand binding region | Interproscan |
| IPR050726 all species → | Family | Metabotropic Glutamate Receptor | Interproscan |
| IPR038550 all species → | Homologous_superfamily | GPCR, family 3, nine cysteines domain superfamily | Interproscan |
| IPR000337 all species → | Family | GPCR, family 3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24060 all species → | METABOTROPIC GLUTAMATE RECEPTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004930 all species → | Molecular Function | G protein-coupled receptor activity | Interproscan |
| GO:0007186 all species → | Biological Process | G protein-coupled receptor signaling pathway | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0001640 all species → | Molecular Function | adenylate cyclase inhibiting G protein-coupled glutamate receptor activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007216 all species → | Biological Process | G protein-coupled glutamate receptor signaling pathway | Interproscan |
| GO:0051966 all species → | Biological Process | regulation of synaptic transmission, glutamatergic | Interproscan |
XP_031552002.1.Transcript abundance of XP_031552002.1 across 18 RNA-seq samples of Actinia tenebrosa. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism | 5 | 0 | 0.00 | 0.00 | |
| Tentacle | 4 | 0 | 0.00 | 0.00 | |
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Acrorhagi | 3 | 0 | 0.00 | 0.00 | |
| whole | 2 | 0 | 0.00 | 0.00 | |
| whole organisim | 1 | 0 | 0.00 | 0.00 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR2437124 | whole organism | whole organism | not recorded | not recorded | SRP063756 | 0.00 |
| SRR3193648 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3206038 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3210696 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 0.00 |
| SRR4696535 | whole organism | Whole Organism | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677495 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677502 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677522 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 0.00 |
| SRR6282389 | Tentacle | Tentacles | not recorded | not recorded | SRP124815 | 0.00 |
| SRR4677488 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677492 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677518 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677507 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677512 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677515 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR3193284 | whole | whole | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3216075 | whole | whole | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3207346 | whole organisim | whole organisim | not recorded | not recorded | SRP070917 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (ATENE_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Actinia tenebrosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 0 | not in this network | - |
| Negatively correlated | 0 | not in this network | - |
This gene has no edge at all in the Actinia tenebrosa network, in either direction — it is not one of the genes the network was built from (the network covers genes with enough expression variation across the transcriptome samples). The counts above are a property of the network, not a failed lookup.
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Actinia tenebrosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
