Gene detail

Detailed information of XP_031552801.1 in Actinia tenebrosa

Genomic Location: NW_022258825.1:225967...235870
NR annotation: XP_031552801.1, proline-, glutamic acid- and leucine-rich protein 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_031552801.1

ATGGCGGCTGATACAGCTGTGGTTGTTGGTTCGTATTTAAACGACAATAACAAGACAGATAAGCACATTTTTACACTCTTRAAATGCGTAAAAGAAAACCAGTGTCTTCTAGAATACGAGTGTAGTAAGGATTGGACTGCAAAAGCAAACAGCTTTTTAAATTCAAAGACAGAAAGATGGCTAGGTATCAGCTTACTCGCAACCATTATACCACAGTGTGACACAGAGACTTTTACAATTAACTGTATAACATGGATAAAAGCTATAGTGCAGGTTATCCAGTCTTCTTCAGCTTCATCAAGTTTGATTCAATGTTCTGTGAGGGTTATGGATGATTTGATGAAATATGCTATACAGTTTCCAGATATATCAAGAACGATTGCAAATTCTGTCATGCCATCATTGATCTCAGCACTTTTATCTCGAAAAGACAAGGATGTTGATAGTATATTATCTGGTATTTGTACATGTGTAAGGTATATGCCAGGACCTGTAGCACCATTCAAGGTTCAAATAGAGAGCTACATTATTCCTTGTCTGGATTCCTGGAACACAAAAATTAGAAAGAATACTTGCCAGTGTTTTGCTCTTCTTGCTGGCTGCAGCAGCAATACAACATCAACTGACAAATACAAAACCAACTGGGAGTGCCAGTGGAATAGAGTTTTAGCCACAATAAACCATGCTTTGAATAATCTGTATGCGAATGTTGAAATGTCAAACAACCCACTAAATGATACCTTGCTTGGAAAGACAGAGACATTGGCAGTGAGTGATATAACTGATGCAGAACCTGAGAGAACCAACGTATTGACTGCCAGACTGATCTCACTGTTGGATTGTCTCAACATCATGACAAGAGAGGGAACTCATAGAATTTCCATGATACCAATAGAAGATACTCTTCTACTAGTTGAACGAATTGTTGCAGTTAATGGCAATATGCTTAAAAGTGTGTCAGTTGATGTAGTTCTTTTAAAGACCTGCTTATCTGTCATACATGAGAGTGCTATAAGACTGCTTAACTCCTTATTACAAAGATGCAGAAGTCTTCTCTTGCCAAACAACCACCAGATATCGAATGTGCTGATAAGAGAACTGTCCTGGACATTAAATGACAAGTCTCAAGATAAAAGACATGATGGACACAAACCTTACAGTAATCTTCGATGCATTTTGTTCAAGTGTTTCATCAACTGGTGCCATCTGAAGGCCAGCATCAGTACAGATATTATAAAGAAGGTTATTCTTAATATCTTGACTGACATCAGACCACAGACCAAACAAACTAAGCTTATGAATCCAGATGACCATAAACAGCCAAAATCTTCCAATAAGGCAAAAAAACGAAAGCTTCAAGAAATGGAACAGCTAAGCACAAGTCAAAAGAAAGAGAACCCTATCCACAATCTGTGTGTCTGTCATGCTGCACTATCTGCTCTATATGCAATTTTAATGAATGGTGTGGCCAACCTCACCAAAGACTTATATCAGGAGATACAAGGGGTGTTGCTAAACCTTATTCTGCAATGTCAAGTATCTGTACCTGGAAGAATGCCATCACCTTATTCCGATGCAGACTGTCGTAAATCTCTTTATCAGTGTCTGCTGGCATGCGTCGTAGCTTGTCCACCACAAGCACCTTCTTCCATTCAGTGTGCCATAAGATGCTGTACAAGGGGCTTACAAGATATGCACCCCAAGGTGTCAAGCTACTGCCGAGAAGCATTAACTATATTGACTGCCATTATACACCCTTTAGTACCTTCTCTTGAGAGTGCAACACAGTTTGTTATGCTTCCAACAAACAGCAAAACATGTGTAGTCCAAGATAACGATAAACACCAAGAAACTAATGCCCTATCTGCTGAAACATCTGTGGTTAACCAGAATGGCTCAGAAGTACCAGCTCATGATGGCAGTAGGTTGTTAGAGGGCACAGTTTTGGACGTGCCAGTAGGTGTATGTGAAAGTATGCAGGCATCATCCAATACCTACACAAAAACCCAACCTAGAGAGAATGAAGAATTGCAGATCAACACTGATTTTAATACAGATATTCAACAAATTAATATATTTAGAAGCACTCTTTCAAACCAAGATCCAATGGACACAAGAGAATCGATAAACACACAAGCCATTGAATGCACAAAACACTCAGATCTTTATTCCTCTTCAAAACATCAGTCAAAATCTGATGTATTAACCAAAGACAATGTGGATATTGCTGCTTCTGGGGCATCAAAAAGTGATGTTTTTGAGTCAGATTTGCAAGAAGACACCAACATCAGCCTACCATTGACAGATACTTTAGATGCTGAAAGCATTGAGATGAGTCCGGCTAAAATGCAGAAGCTTGGTGCAGGGAAACATATTGTCGTGCGAAAAGATGAAGAGAGACATGAGGGAAAGACTAGTATTGGGAATGCTAAGACAGATGAGGATATGGGTGATGTAGATGAAATGCTTGCCACATTTGTGAATACTTCTCCTGATTCAGACAGTGACTAA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08167	RIX1	rRNA processing/ribosome biogenesis	Repeat	Interproscan
PF08166	PELP1_HEAT	PELP1, middle domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012583	Domain	Pre-rRNA-processing protein RIX1, N-terminal	Interproscan
IPR012980	Domain	PELP1, middle domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34105	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16913	PELP1, MNAR; proline-, glutamic acid- and leucine-rich protein 1	-	Ribosome biogenesis	ko03009	deepkoala