Gene detail

Detailed information of XP_031553690.1 in Actinia tenebrosa

Genomic Location: NW_022258959.1:160729...164046
NR annotation: XP_031553690.1, ATP-dependent RNA helicase DEAH12, chloroplastic-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_031553690.1

ATGCACTTTGCTACTTATGAAAAGCCTGAAGAAGCGACACTAGCCGTAGAGTTTTGTACAGCTGATGAGCTTGGTTACAGGGTTGAGCCCAAGAGGACACGACAGATGTCACAGCAAGGAAGAGACTCCTCTCATTTTAACTTCAGAATAAAAATAACTTGGCATCGTCGCGAGCCTAAAGGAATGGCAAATGTGTCCTTCGAGAACCAACCCGAAGAAGTGTGGTACGAGATTTCTTCGATATCCGAGCTTACAATAAGATCCAGATCAGCTCGTGTTCGTAGAGACAAGCATAGAGAGAMGACCCTTTTCCTCCACAGCCTTAGTACTAACACTACAAAGCAAGACATCAGAGAAGCAGTGGAGACGTTTTTTCATGGTTGTATTACGATAAGAGACCAACACATTTTAATCCAGTACAAACAGAGAGAAACAATGGCCGATACAGGGGCACAGAAGACAGTTTTAGAGAAATTGATATCAAGATATGCAAGGCCAGGAAGTTTTGAGGTAACAGTGCTAGACGTACCAAATAAATCCCCTTTTGGTGTCGCCAATGCTGATTTCCTCAACCCAAACGAAGGCATTCAGGTCGTTGGACGTCTCAGTGGAAAAAGATGTTATGGCCTAAACCGCCTTGAAATGTGGGAGGTGTTCCTAGAAGTCAAGCCTTACTTGAATTTCTTTGATACCTGTATGACAAGCGTCTACGACCTCGTCAAGGATGAAGTCCAAAGCAAAATCGATGAAATTGCAAAAGAATGCGCTGAAAACTGCAAACACCAACTTCGATTGAAAGAAAAGCCAGCAAAGTCCAAAGGACGGATKGAATTATCAGTGGATACGACGTGTTTGGAACACCATTTGCAGGCGTCGAAAGAAATATCCAAGTGTATCCAAGGTGAGAAGATCGAATGTTCTAAACCTTCGATGTTTCTTCTCGGTAAAAGTGGTAGAGACCATCTCAAGGAAATTCAGAAACAAAGTGGGGCCTTCATTTGTACTGATGAAAGAACCATGGCTATAACCTTGTATGGCACTAGCGAACAGAAAGAGAAAGCAAGAGACGCTGTSTATCGTTTTATCCAAGACCTCGCATTGCAGGGAAGYACTGTTTGGGAAGTCAACTTAAAAGAGGACGGACGGCCTAGAGGTTTGATGAAACAACTGATGTCAAAATATGGTCGGGAATTTGAAGGACTACTTGAAATAGAAGGAGTCAACAAGGTGGATATATACCTTTCTAAGCAAGTCTTGAAGGTCCAAAGTACACCTGACGCAAAAAGCCACGTCCTTCGTGTGATCGAAGAAATAGCAAAGACTATAGCACCCCTTCAGCCAAATACTGGAACKGAAATTGAAGAGGAAGAGTGCCCTATCTGTTTTTGTGCGATAGACGACGAAACAACCTCATACAGACTTGCCATATGTGGGCATGCTTGCTGTATGACTTGTATAGAGCARCAATTCAATGCAGCGGTGTTTCCACTGTGTTGCACTCACGAAGACTGTCCGGAGATGTTTGCTTTGGATATGATCGATCTTCTAACTCAAAAGAAGGAGCTGCATGATAAAGTCATGAAGATGTCTCTTAAGTCCTATGTCGATGCCAATCAAGACAAGGCACGTTACTGTCCGACACCTGATTGCCCAATGGTCTATCCCGTTACCACGAACGGGAAACTATTTCGATGCAGTGTGTGTTCTACTGCAATCTGTTCTTCTTGTCACCAACCATACCACCTTGGTCTTACATGCAAAGAAAATGAAATCGACAAGACAGACCCGGGAAAAGCGTTGCTTGAGAAGTGGATGAATGAGAAACCTGGCAGAAGAAAGCGTTGTCCGTCGTGTAATTCTCCTATCGAGAAAAATGGAGGGTGTAATCATATGGAGTGTGTACACTGTAAATCACACCTGTGTTGGCCATGCATGGAGGTTTTTTCCACCGGAGCTGMGGTTTACGCTCATCAAGCGTTCTGCCCTATACGGGTTGGAAACTAG

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q9Z1K6	E3 ubiquitin-protein ligase ARIH2 OS=Mus musculus OX=10090 GN=Arih2 PE=1 SV=1
O76924	Potential E3 ubiquitin-protein ligase ariadne-2 OS=Drosophila melanogaster OX=7227 GN=ari-2 PE=1 SV=1
O95376	E3 ubiquitin-protein ligase ARIH2 OS=Homo sapiens OX=9606 GN=ARIH2 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR031127	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan