Gene detail

Detailed information of XP_031554635.1 in Actinia tenebrosa

Genomic Location: NW_022259115.1:179689...183208
NR annotation: XP_031554635.1, leucine-rich repeat-containing protein 61-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BV99	Leucine-rich repeat-containing protein 61 OS=Homo sapiens OX=9606 GN=LRRC61 PE=1 SV=1
Q2T9T5	Leucine-rich repeat-containing protein 61 OS=Bos taurus OX=9913 GN=LRRC61 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006057 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12799 all species →	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR025875 all species →	Repeat	Leucine rich repeat 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18849 all species →	LEUCINE RICH REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_031554635.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031554635.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

8TPM > 0

6Conditions

15.0Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	3	7.67	13.76
Tentacle	4	3	7.63	14.65
Mesentery	3	0	0.00	0.00
Acrorhagi	3	1	4.88	14.63
whole	2	0	0.00	0.00
whole organisim	1	1	14.97	14.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	13.76
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	13.11
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	11.48
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	0.00
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	0.00
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	14.65
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	8.84
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	7.03
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	0.00
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	14.63
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	14.97

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.