Detailed information of XP_031555352.1 in Actinia tenebrosa

Genomic Location: NW_022259259.1:62049...249443
NR annotation: XP_031555351.1, triple functional domain protein-like isoform X1 [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2CG49Kalirin OS=Mus musculus OX=10090 GN=Kalrn PE=1 SV=1
P97924Kalirin OS=Rattus norvegicus OX=10116 GN=Kalrn PE=1 SV=3
O60229Kalirin OS=Homo sapiens OX=9606 GN=KALRN PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000858 (this species only)
Ubiquitin familyUBD|Other|SH3 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00069
all species →
PkinaseProtein kinase domainDomainInterproscan
PF00041
all species →
fn3Fibronectin type III domainDomainInterproscan
PF00169
all species →
PHPH domainDomainInterproscan
PF00435
all species →
SpectrinSpectrin repeatDomainInterproscan
PF07679
all species →
I-setImmunoglobulin I-set domainDomainInterproscan
PF13716
all species →
CRAL_TRIO_2Divergent CRAL/TRIO domainDomainInterproscan
PF00621
all species →
RhoGEFRhoGEF domainDomainInterproscan
PF07653
all species →
SH3_2Variant SH3 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001251
all species →
DomainCRAL-TRIO lipid binding domainInterproscan
IPR008271
all species →
Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR035899
all species →
Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR000719
all species →
DomainProtein kinase domainInterproscan
IPR003961
all species →
DomainFibronectin type IIIInterproscan
IPR051336
all species →
FamilyRho GTPase-activating Guanine Nucleotide Exchange FactorsInterproscan
IPR000219
all species →
DomainDbl homology (DH) domainInterproscan
IPR018159
all species →
RepeatSpectrin/alpha-actininInterproscan
IPR001452
all species →
DomainSH3 domainInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR001849
all species →
DomainPleckstrin homology domainInterproscan
IPR036865
all species →
Homologous_superfamilyCRAL-TRIO lipid binding domain superfamilyInterproscan
IPR017441
all species →
Binding_siteProtein kinase, ATP binding siteInterproscan
IPR002017
all species →
RepeatSpectrin repeatInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036028
all species →
Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR013098
all species →
DomainImmunoglobulin I-setInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR036116
all species →
Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22826
all species →
RHO GUANINE EXCHANGE FACTOR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004672
all species →
Molecular Functionprotein kinase activityInterproscan
GO:0006468
all species →
Biological Processprotein phosphorylationInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005085
all species →
Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15048KALRN; kalirinEC:2.7.11.1
Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031555352.1 across 18 RNA-seq samples of Actinia tenebrosa. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples
0TPM > 0
6Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism 5 0 0.00 0.00
Tentacle 4 0 0.00 0.00
Mesentery 3 0 0.00 0.00
Acrorhagi 3 0 0.00 0.00
whole 2 0 0.00 0.00
whole organisim 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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