Gene detail

Detailed information of XP_031557166.1 in Actinia tenebrosa

Genomic Location: NW_022259670.1:141636...145542
NR annotation: XP_031557166.1, di-N-acetylchitobiase-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01459	Di-N-acetylchitobiase OS=Homo sapiens OX=9606 GN=CTBS PE=1 SV=1
Q8R242	Di-N-acetylchitobiase OS=Mus musculus OX=10090 GN=Ctbs PE=1 SV=2
Q01460	Di-N-acetylchitobiase OS=Rattus norvegicus OX=10116 GN=Ctbs PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006504 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00704 all species →	Glyco_hydro_18	Glycosyl hydrolases family 18	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047898 all species →	Domain	Di-N-acetylchitobiase, catalytic domain	Interproscan
IPR051887 all species →	Family	Glycosyl Hydrolase 18 Domain-Containing Protein	Interproscan
IPR011583 all species →	Domain	Chitinase II	Interproscan
IPR029070 all species →	Homologous_superfamily	Chitinase insertion domain superfamily	Interproscan
IPR001223 all species →	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46290 all species →	DI-N-ACETYLCHITOBIASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0009313 all species →	Biological Process	oligosaccharide catabolic process	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12310	CTBS; Di-N-acetylchitobiase	EC:3.2.1.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031557166.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

9TPM > 0

6Conditions

19.1Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	3	10.21	19.11
Tentacle	4	3	6.50	14.09
Mesentery	3	0	0.00	0.00
Acrorhagi	3	0	0.00	0.00
whole	2	2	17.47	18.55
whole organisim	1	1	16.37	16.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	19.11
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	17.65
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	14.27
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	0.00
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	0.00
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	14.09
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	9.43
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	2.50
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	0.00
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	18.55
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	16.38
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	16.37

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.