Gene detail

Detailed information of XP_031558533.1 in Actinia tenebrosa

Genomic Location: NW_022260014.1:113798...127563
NR annotation: XP_031558533.1, bromodomain-containing protein 3-like isoform X2 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_031558533.1

ATGTTGAATCTCTCGTCGTGGATGGACRCGCTAGACCATCCGACTTCGGAAAATTTCCAGAATTCCATCACACGCATTTACAAAGGGCCTGGTGAGGCAGTACAGCAGTCTGGTCTTCACAGTGAATATGGAGTCGCCGATTCAGTGAATGGAATAAGGCCCTTGTCGAGCCCCGAGGGGCACGAAAAACGACCAAGAAGACTCTCTCACAAATACGACGATTTTGAGCAGCCTACAGTGCGAGGTATGGCTCAACCGACCTCATCTACACCACATCAGCCAGCACTAAAGAGCCACAGAACGACAAACCAACTTCAATATTTACAGAAAACGGTTATGAAGGGAATATGGAGACATCAATACGCTTGGCCTTTCCGCGAACCTGTAGATGCTGTAAAGCTCAATTTACCGGACTACTACAGCATCATAAAGAAGCCTATGGACCTTGGTACCATCAAAAAGAAGCTTGAAAATTATGATTATAATAATGGCAAGGAATGTATTGACGATTTCAATCTCATGTTTGAGAACTGCTATCGATACAACAAACCAGGAGATGATATAACATTAATGTGTCAGACAGTGGAAAAAGTATTTAAACAAAAATTAGGGGCATTGCCTCCTGAGGAAAAAGAAATTCTAATTGGACCAAAGAGAAAAGCAGATGGAATAGGAGGAACTGGAGCAAAGAAGGGCAGAAGGCCGGGGCCAAAACCTGAATTGCATGTGCCAGCGACAGTTGTGCCTGACAGTACTCCAATGACGACAATTCCTCAACCAGCAACAATTACTACCCTCCCTCCGTTGGTAACAGCTACTACTGCATTACCTACTCCAGTAGAAGCAACAACCACAGCACTCCCTACACCATCTGTTACGCCAGCACCCGTAATGCCTGGACCACCACCCATCGCTACATCCAAGATCAAGAAAGGAGTGAAACGCAAAGCAGATACTACAACGCCAACCACACCAATAGGAGACATTGACTCTGGATTATCAGCCCCTAAAGCAGCTAGAGTGCCAGCTCGCAGGGAATCAACTAGAACAGTTAAGAAACCAAACAGAGATCTCCCTGAAACACCAAGTCAGTCAAGGGGAAAAAAGAAAGCACTTTCAGAGCAGCTAAAGTATTGTAACTCTATTCTAAAAGACATGTTTTCCAAAAAGCACTATGCATATGCTTGGCCCTTTTACAAGCCTGTGGATGCAGATGCTCTTGGTCTGCATGACTATCATGATATCATCAAGCAGCCGGTTTCCATGGAAGAACTTAAGGAAAAAATGGACAACAGAGAATTCAAAACTCCATCAGAATTTGCTGCTTCTGTTCGCTTAATGTTTAGTAACTGTTATCGATACAACCCTCCTGATCATGATGTAGTCAAGATGGCAAGACAGCTCCAGGATGTTTTTGAAATGAAGTATGCAAAGATGCCAGAGGAGCCAGAGCAGCCTATTCCAAGCCCTCCGTCTGAAACACCTCCAGCAGAAGAACCTGAACAACAAGAAACTTCAGAAGAATCATCGTCCGAGTCCAATGACAGCGAGGCAGAGAGGGAGGACAAACTAACACAATTACAACAACAGCTCATATCAGTACATGAACAGCTTAGTAAGCTAACAGGAGAAAAAGTCATCCTCCCGAAGAAAAAGAAAGAACCAGTAAAGAAACCAAAAAAGGAGCACATAGAAAAGCCAGCAGGGAAGGGCATTACTCACTTCGTAGAGAAACCAAAAAAGGAGCACACAAAACCTAAACCAGCACACAAACAAAAGAAGCAAGAAAAACAGACCACGACGGCAGTAAAAGCTGAAAAACCGACTAAGAAACAATCGGCTTCAAAACGATCAGCAAAGAGCAAATTGGCTGCCAAGAAAAAGACATACGAAGCTGACAGCGATGAAGAAGATAATGCCAAAGCCATGGACTATGATGAAAAGAGAGAACTCAGCCTAAACATCAATAAACTACCAGGTGGAAAACTCGGCAAAGTGGTACAGATTATACAATCAAGAGAACCAGGTTTGGGTGACACAAACCCAGATGAAATAGAAATAGACTTTGAAACCTTAAAACCGGCAACATTAAGAGAACTGGAACGGTACGTCCAGTCCTGCTTGAGAGAGAAAAACAAAGCGCCTTCTAAAAAACCCAAGAATGCAGAAGAGAGAGAACAAGAACAAGCTCGGAAAAAAGAAGAATTAGAAAAAAGGCTACAGGATGTCAGTGGAAAAATCGGAGCACCAGCACAGAAGAAACAAAAGAAAGATTCCCATAACTCAGAACAGAGAATAATAGATGTTGTGGGAAGTGAACCAAGGCCGTCCCGCTTGAGTGAGAGCAGCAGCAGTGGATCTGGGTCAAGCAGTAGCTCTGGCTCATCCTCCAGCTCTGGCTCTTCAAGCTCTGAAAGCAGCTCTGGTTCTGAATCAGAGTCTGGTGGTAAAAGCCATAAGACTGCCCCCATTACAAAGATTAAGTCTGGTGTTGGAAACTCTGCAAAAGCTTTGGCAAAATTACACAAAACGGATGCTCCGAATGTATCGGTAGTACCAGTAAAGCCAGAAAAAAAAGTTATACCATCCCTACCCCCAAGTCAACATGTAGCTCAACCCAAGCACCAAAAAGCCACTTCATCTCATTCAAATACTCGAAAATCAAATGGTACAGGGAAATCAAAAGCTCTGCCCAAATCACAAACGAACGTAACAAAGGTACCAGCCACTACCGTGCCTCCAGTTAGTATACCAAAACAGGTCCCACACACTACAACAAAACCTGTGGTTAAACAAGAACAATTACCGGTGAAAGGAACTCCAGTGCCGAAGACACCCCAAGTACCGAAAACAGTAGCTACTCCTAAAACAGTACCTGCTCCAAAACCTGCTGTACCTACACCTAAAGTTACATCTACACCAAAGACAACCAATCCAACGTTTACAGCTGTTAAAAATATAACAACTACAGCAGTGACTCAACCCAAACCAGTAGTTTCTGCCATGTCAACGCCCATGAACAAACCACTGGCTCCAGTTATAAACCCAGTTGTGACCCCAGCTGTGACCCCAGTTGTGACCCCAGTAAGCAGTACAGTACAAGGTGCCGTGAAGGATAAAGACCCAATAAAACCTACCAACACAAAAATAACGACTCCTGCTGCACCTAAATCAGGTGGAACTGGATTAACATTTTCTATAGGAGACCTTCCAGGATCATTAGCGACAATAGGGCAAAAGCCATTAGATGCTGGGATCAAAAAGGACAGTGTTAAACCTATTCGTCACGTCCCATCCTGGTCTAGTCTGCCATCAACAGCTTCACCATCTTTAACAAGAACGCCATCATCAACCAGCAGCTTTGAAAAGTTTAAACAACAAGCCAAAGATAAAACTGAAAGGGAAAAAGCATTAAAAGTACAAGAAGAACAGCAAAAGCAAAGAAGAGAACAAGTTGAGGCAGAACGAGCAAGACAAGCAGAAGAACGCAAAAGGGAGAGAGAAGAAGAGGAAGCATTAGAACGAGCAAGACTGCAGCACCAAGAAGAAAGAACCAAACAAGAAGAAAGAAGAATGATGGACCGTAATCGTGCACGAGAAGCCGAGAGGAGAAGAAGAGAAGCTCAAGCCGGCACGATTAACATGAACGAACAAAGTGATATAATGGCTTCATTTGAAGCAGATTTTACACATTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q32S26	Bromodomain-containing protein 2 OS=Bos taurus OX=9913 GN=BRD2 PE=3 SV=1
P25440	Bromodomain-containing protein 2 OS=Homo sapiens OX=9606 GN=BRD2 PE=1 SV=2
Q7JJ13	Bromodomain-containing protein 2 OS=Mus musculus OX=10090 GN=Brd2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439	Bromodomain	Bromodomain	Domain	Interproscan
PF17105	BRD4_CDT	C-terminal domain of bromodomain protein 4	Family	Interproscan
PF17035	BET	Bromodomain extra-terminal - transcription regulation	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487	Domain	Bromodomain	Interproscan
IPR043509	Domain	Brdt, bromodomain, repeat II	Interproscan
IPR043508	Domain	Brdt, bromodomain, repeat I	Interproscan
IPR031354	Domain	Bromodomain protein 4, C-terminal	Interproscan
IPR027353	Domain	NET domain	Interproscan
IPR050935	Family	Bromodomain-containing chromatin reader	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR018359	Conserved_site	Bromodomain, conserved site	Interproscan
IPR038336	Homologous_superfamily	NET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22880	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0070577	Molecular Function	lysine-acetylated histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08871	BRD2; bromodomain-containing protein 2	-	Chromosome and associated proteins	ko03036	deepkoala