Gene detail

Detailed information of XP_031558905.1 in Actinia tenebrosa

Genomic Location: NW_022260113.1:100017...113779
NR annotation: XP_031558905.1, bromodomain-containing protein 1-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_031558905.1

ATGGTAAGCATCAGAGAACTGATCGACAATCTCCGAGCTACGAAGCCGCCATACGAGTGTCCTTTGTGCCAAAAATTTTACAAGAGCTACAGCGGAATTGAATATCATTTACAAACATTCAAGCATGATGGGTCCGATGCTCCTCCACCGCCATCCTCGTCCAAAAAGAGTAAAGGAAGGGGCCGAAAGAGTGGAAAAACGGGTAAGAACAAGAAGCCTCCACCATCACCCCCACAAGTCGTTGTTCGGGAAACACTAACTTATGCTCAAGCCCAACTCATAGTTGAAGTCGAACTTGAAGGACAAGTTAATCGGATTGGCATTGATGATTCTTTACCAGTTACGGAGGAAAAAGAGTTAAAGGTTGCTGACAAGGTAGAGGAGACGATAGAACATGTAACTCCAAAACCTCTCACAAAAACAAAGAGTAAAAATAAGCACGTAAAGAATGATGTTGAAAATACTCCTACGTTGCCCAAGTCAGATTTTGTATCTCTAGATGACTGTTTCCACCAGCCCGATGCTCCTATTAGGCCAACTACATACTTTAGGTTCATAGAACAGACGACTGAAGAAATGGATGAAATGGTAGAGTATGATATGGATGAAGAGGATTATTCATGGCTGGATATGATCAATGAACAGCGCAAGTCAGAAAGCATTGCCCCAGTCTCTCAGGAAGTATTTGAAACTTTGATGGACAGGTTGGAAAAGGAGTCATATTTTCAGAGCCAAACTACATGCGACCCAAATCAGTACATTGATGAGGATGCAGTTTGTTGTATTTGTAATGATGGTGAATGCCAAAACAGTAATGTTATTCTATTTTGCGACATGTGTAACTTGGCTGTCCATCAAGAGTGTTATGGGGTCCCATACATTCCTGAAGGACAGTGGCTCTGCCGACGTTGTCTGCAGTCACCATCAAGGGCAGTGGATTGTGTCCTATGTCCAAACAAGACTGGAGCTTTCAAGCAAACAGATGATGGTCGCTGGGGACATGTGGTTTGTGCACTATGGATACCAGAAGTTTGTTTTGCAAATACGGTGTTTCTTGAACCTATTGATTCGATAGAAAATATCCCATCAGCTCGCTGGAAGCTCACATGCTATATCTGTAAGCGTCGTCAGGGAGCATGCATTCAGTGCTTCAAAACTAACTGTTATACTGCATTTCACGTAACATGTGCGCAACAAGCTGGTCTTTTCATGAAAATTGAACCAATAAAGGGAGAAAATGGGCAAATGACAGTTCGCAAAACAGCATACTGTGATGCTCATACTCCAGACTACCTAAACCCTGATAAAGAACAGGAAGAGGAGAGTGAAGAGAAACTCCTTCCTGTTAAAAACAAGCTAGCTACCAAGAATGGAACATCCAAGCGCAGTATCAAAAAGTTTAGAAAGCTTCTTGCAGAAAAGAAAACTATGCCTGTTCCTGTCGTCAATATTCCATTCATTCCAGCTCACAGGTTAGGGAAGATTGTAAGCAGGGTTGCTATGGCGAGGAAAGCACAGTTTGTCCAATCTCTTCAAAGTTACTGGATGTTAAAACGCCAATCAAGAAATGGTGTTCCTTTGTTGAGAAGGTTACAAGCCACACATCTCAGTCAGAAGGGAGGAGGAGATGAATCAAGTGAAAGATCAGAGAGAATAAAGGCCATGAAGGAGCAGCTACACTTCTGGCAGAGGCTTCGACATGATCTTGAAAGAGCTAGACTGCTAGTGGAGCTGATCAGGAAGAGAGAGAAACTGAAACGAGAACATGTTAAAGTAAAGCAGCATGTTGTGGATCTGAAATTGCAGCCACTGAACATGGTGTTGAGGAAAGCCTTAGAACAAATCCAGAATAAAGATACCGGTGACATCTTCAGTGAACCAGTGAATCCTAATGAGGTTCCTGATTATCTTGATGTTATTAAAACCCCAATGGATTTCTCAACCATGGGTTCAAAAATAAACTCCAACTCCTACCACACGATAGACCAGTTTGAAGCTGATTTCAGCCTAGTCATAGAAAACTGCTTACAATACAACGCTCCAGACACCATCTACTACCGTGCAGCTCAGAAATTGAGAGACCAGGGGAGGCCCATCATCCGAGCTGCACGCAGACAGATTGAAAGGGCAGGTATTGACCCAGTCACTGGCTTGCACACTAAGGAGGCTCCCACCCTTGCTGATAGGGAACCAACTGAGGAAGATTTCATTTTGACTGACGAACAAAGAAAAGAAATGAGTTTAGAAGAACAGCTGAAGGATTTGACGGAAAAACTTGACATGACACAAGCAATAAAACATGGAGGTGTGAGGGCAACAAGAGTTCGAACGCTTAGAAAAGAAATTGCTCTTGTTAGACGGAAACTGAACCAGGAAAAAAGACGCCTTTCTGAATCAAGTGGCGGTGCTTTTAACGATGAAAGACGATCAAGATCTTGTGACGTATTCACCAGTGAAGATTCAGCCAATGAAATACCTCCAAATAAAAAACCAAGGCTTGAAGAAAACACGCTTCCCGAAGGAGACATGGCAACTACACATCCCGCGGGTACCGTGGCGTCTGAACCCAAGGCAACCGCTGACYCGTCTATCTCCACGGCAACCACCAACCCCAGCCCTGGCATGAGCCGAAGGAGTGGGATCCTCTTCAACAAAGGTCGAAGTCGTGTACGACGAAACTTGAATGTGACGAACGACAAGTCGTATGTGGATGGCTCTGTGGTTCCAAACCACGTTCTACAACCGGTCAATCATAAGAAAAACACCGACGTCTCTACGGAGTCGGAGGTGACTCACAATCACAAGACAGATGTCAACAGAGGAGTAGAAAGTTTGTTTGAGGAGAGAAACCCGGTCAGAGATACGAACAATAAGTGGCGCAGTGACATCGGTAATCATGAAGGGACGTACCATCACAGAAAACCGTACAAAACAGAGCTTGGTAAACTTATCGAGGACGCGACTCTACCAATGTACGAATGTACGAATGAGGGACGCGACTTTGTTTTTACTAACGGCTTGAGACAAAGGAATAACCGATCGTATACTAGTGGGTCGGAATCTGATGCCGAAGTAAGGGCTAACGGTGGCAGACAGAAAAAGGTAAGGCTGTTCTCGTCGGTTTCGGAGGATGAGCAAAGTACAACGGACACTGAGATAGGCGCGGCTGAGAATCGGGTTGCGAACGGGCCAGTCGAGGATATGGTAAAGAAGAAGCGACAGAGAAAGACCACGACGGATTCTGATTTGGATTTAACACCACTTGAACCGTTAGAACTGGTGTGGGCCAAGTGTCGTGGATATCCCTCATACCCAGCTTTGATAATAGACCCCAAGACAAAGAAAGGATTGGTGTATAATGGTATCCCAATACCTGCGCCTCCAGAAGACGTGATGAGAGAGAGATCAGTGACAGATGACTCGCTGTATTTAGTACTCTTTTTTGATACAAGACGGACATGGCAATGGCTGCCTCGACATAAATTAGAATTATTAGGAGTGAACAAGGCGATAGACGATAGCAAGCTAATGGAGGGCAAAAAGCTGTCCATGAGAAAGTCACTACAAAAAGCTTACGAACGAGCTATCATGCATCAAAACCAAGTAGAAGCAGGTAGAAGAAGCATGGAGGAAGGTGACGAGGGCGAGGATGAAGATGAGGAGGAGGATGATAATATCAGTGAAAATGGGTTCGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55201	Peregrin OS=Homo sapiens OX=9606 GN=BRPF1 PE=1 SV=2
B2RRD7	Peregrin OS=Mus musculus OX=10090 GN=Brpf1 PE=1 SV=1
G5E8P1	Bromodomain-containing protein 1 OS=Mus musculus OX=10090 GN=Brd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005083 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13832 all species →	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF13831 all species →	PHD_2	PHD-finger	Family	Interproscan
PF10513 all species →	EPL1	Enhancer of polycomb-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR034732 all species →	Domain	Extended PHD (ePHD) domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR050701 all species →	Family	Histone Modification Regulator	Interproscan
IPR042008 all species →	Domain	BRPF1, PHD domain	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019542 all species →	Domain	Enhancer of polycomb-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13793 all species →	PHD FINGER PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070776 all species →	Cellular Component	MOZ/MORF histone acetyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11348	BRPF1; bromodomain and PHD finger-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031558905.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

16TPM > 0

6Conditions

29.4Max TPM

13.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	5	19.51	29.42
Tentacle	4	4	17.51	26.07
Mesentery	3	3	8.97	9.63
Acrorhagi	3	3	10.41	12.73
whole	2	0	0.00	0.00
whole organisim	1	1	22.58	22.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	29.42
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	21.59
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	19.96
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	16.95
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	9.64
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	26.07
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	19.71
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	14.61
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	9.65
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	9.63
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	8.86
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	8.42
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	12.73
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	9.46
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	9.04
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	22.58

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.