Gene detail

Detailed information of XP_031560839.1 in Actinia tenebrosa

Genomic Location: NW_022260665.1:72906...83020
NR annotation: XP_031560839.1, uncharacterized protein LOC116296873 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_031560839.1

ATGTTTAACAACGCGCAATTAAAAGAGCATGGTGAGCTGCTGAATAAGAGCATGGATGGAGAAAATTCTTCCAAGTTTGTCAAGGGTCTAAAACAATTAAACTACCAAAGGAGCAGCGGTTTGTTGTGCTTGTTAGACGAGGAGAAAAATCAAGAAGAAGAGAAAAACCCTGGAGTTGAAGTAAAACAAAATGGCGTCGAAGATTTCGAGATTAAAGCTAAAGAAAACGGAGCTGAAATCAGGTTACAGTGTAATACAAATGGTGGCCAATTTGAACAGACAAGTGCCGCTGGTACAGGGCTTTTCGATGAAGTGTCCAAAGCCTTTAAGAAAAAACGCAGCATAGCTAACAAATGTAAGGTTTATGTGGGTAATATAGGTTATAAAGTGAGGAGTAGAGAGTTCAAAGAATTCTTCAGTGCGTTTGGAAGAGTGTTGCAGGCGCAGATAGTACAAGATCGTATCAAGAAGAGATCACGAGGATTTGGGTTTGTCACATACAGTAATGAATATGAAGCTCAGAAAGCCAAGCAATCTGCAGATGAAGAACGTACGTTACATGACAGAGTTATGACAGTAATGACTCCCACCAGAAAGAGAAAAGGTGGACCAGTTAGTAAAGAACAGTCTCTAGAGGAAGCTCTGGAAGAATTCCAAAATTTATCACTCTTAGAAGAAAAAGAATCAAATGAAAACCTGGACAATGAAAAGGGTCAACTATCCATATCAGATTTAAATGATGACATCTTGATCCTAATATTTTCTTATCTGCAACTGAAAGACAAAATACACATTGAAAGAGTTTGTACAAGATGGAAGTGCCTTCTTCTTAAAGTTTGGCCATCAGTAACACACTTAGATTTCAAAAACTTATTTTCTCTCTACAAAGGAGGTCTAACAGATGACATTCTGCTGGGAATATTTCGTCGAGGCTGTAAAAATCTTACTTCACTTGATCTTTCAGCATCTCCATTTCTTTTAACAGAGTTTGCAGTTCATTGTATTGCCAAACACTGCAAAAACCTTAGGGAAATAAACATAACAGGAGTAGAAGTATCAACTTCATCCCTCAAGACCTTGTCAAAAGAATGCAGTAAATTAGAGAAATTAGTTCTGCGTAGGTGTTATCAGGCTGGTGAAAAAGGATTCTGGTGGATATTCAAGCAGTGTACAAATCTAAAGCATATTGACATCTCAGATAATAAAAGGCTTTCTGGGAAGTGTTTCTTCATGCTGTCAGACACTGTAGAGAGTCTTATTCTAAGCCACTGCAGCAGGCTGACTGATAGCAGTGGTGCGTTTATTGGGACAAGGTGTAAAAACCTCAAATATATTGATATATCTGAGTGTTTGTCTCTGACAGATACTGGTGTGAGAGATATAATTCAGGGCTGTCCCAAGATAGAAGAGTTTTATTTTAAAAAGTGTCCTAAAACAGTGACAACACATGGACTCTCTGTATTATCACGACTAAATCACTTGGTTGTGCTGGATCTTTCACTTTGTGATGCTGTTGATGATCAGATTCTTCTACTGCTGGGCCAATCATCTATCCACTTGAAGTCACTGAACATCGAGGGCTGTTTTGGTAACATCACTGATACTGGATTGCAAGCTCTTATCACGTGTCACACACTGGAAACACTTAACATCAGCTATGTCGATGAGATCACTGATGTTAGTATCAGTCAGCTGGCCCGTAATGGCTCCATACAGACCTTTGTTGCTCGAGCATGTTCAGGCTTGTCAGATGATGTTGTTAGGAGTCTCCTTTGTCACTGTACCAATCTAACAACCCTGGACATGAGTGGATCCATCAACATCACTGACATATCTCTAAACCACTTGACTGAATACTATACGTCATCACAAAGACCTGTACTGACATTTATCATTGGAGGTACCCAGATAACCGAAAAAGGCGTGTCAGACACGTGTAGTCCTTGTCATAACAACTGTAAAATAGATACATTCGACCTGTCTAGCGAATCATTGCGATTCGGAAACCCAAGACTCCAGTCAATAGCTCCTTTCCTTGAAGAAAGTGACGAAGATGATAACGATAGTGATGGTGAAGATGAGGATAACCATATCGAACAGATCAATTACGAGATGGGGAATGATGTATATCAAGACTTCCTAGAGGCTGATGACCCCGCCCTTATGATGGACGAGGAGTACTGGATGTTTGATCACGATTAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q99383	Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRP1 PE=1 SV=1
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646	F-box	F-box domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan