Gene detail

Detailed information of XP_031561237.1 in Actinia tenebrosa

Genomic Location: NW_022257947.1:698272...703876
NR annotation: XP_031561237.1, uncharacterized protein LOC116297167 [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CPY0	rRNA methyltransferase 2, mitochondrial OS=Mus musculus OX=10090 GN=Mrm2 PE=1 SV=1
A7HSA5	Ribosomal RNA large subunit methyltransferase E OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rlmE PE=3 SV=1
Q9UI43	rRNA methyltransferase 2, mitochondrial OS=Homo sapiens OX=9606 GN=MRM2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007548 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01728 all species →	FtsJ	FtsJ-like methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015507 all species →	Family	Ribosomal RNA large subunit methyltransferase E	Interproscan
IPR002877 all species →	Domain	Ribosomal RNA methyltransferase, FtsJ domain	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR050082 all species →	Family	Ribosomal RNA large subunit methyltransferase RlmE	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10920 all species →	RIBOSOMAL RNA METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001510 all species →	Biological Process	RNA methylation	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0008650 all species →	Molecular Function	rRNA (uridine-2'-O-)-methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02427	rlmE, rrmJ, ftsJ; 23S rRNA (uridine2552-2'-O)-methyltransferase	EC:2.1.1.166	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031561237.1 across 18 RNA-seq samples of Actinia tenebrosa. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole organism	5	0	0.00	0.00
Tentacle	4	0	0.00	0.00
Mesentery	3	0	0.00	0.00
Acrorhagi	3	0	0.00	0.00
whole	2	0	0.00	0.00
whole organisim	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287
SRR3193284	whole	whole	not recorded	not recorded	SRP070917
SRR3216075	whole	whole	not recorded	not recorded	SRP070917
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.