Gene detail

Detailed information of XP_031563167.1 in Actinia tenebrosa

Genomic Location: NW_022258076.1:47139...49788
NR annotation: XP_031563167.1, trefoil factor 2-like isoform X2 [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03403	Trefoil factor 2 OS=Homo sapiens OX=9606 GN=TFF2 PE=1 SV=2
Q08423	Trefoil factor 1 OS=Mus musculus OX=10090 GN=Tff1 PE=2 SV=1
Q63467	Trefoil factor 1 OS=Rattus norvegicus OX=10116 GN=Tff1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001064 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00088 all species →	Trefoil	Trefoil (P-type) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan
IPR044913 all species →	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR017994 all species →	Family	P-type trefoil, chordata	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13826 all species →	INTESTINAL TREFOIL FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_031563167.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031563167.1 across 18 RNA-seq samples of Actinia tenebrosa. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole organism	5	0	0.00	0.00
Tentacle	4	0	0.00	0.00
Mesentery	3	0	0.00	0.00
Acrorhagi	3	0	0.00	0.00
whole	2	0	0.00	0.00
whole organisim	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287
SRR3193284	whole	whole	not recorded	not recorded	SRP070917
SRR3216075	whole	whole	not recorded	not recorded	SRP070917
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.