Genomic Location: NW_022261371.1:375206...401951
NR annotation: XP_031564832.1, DNA repair protein RAD51 homolog 2-like isoform X1 [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families
| CDS |
| XP_031564835.1 |
| Protein |
| XP_031564835.1 |
| UniProt accession | Description |
|---|---|
| O15315 | DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2 |
| O35719 | DNA repair protein RAD51 homolog 2 OS=Mus musculus OX=10090 GN=Rad51b PE=2 SV=2 |
| Q9SK02 | DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=RAD51B PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007425 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08423 all species → | Rad51 | Rad51 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR016467 all species → | Family | DNA recombination and repair protein, RecA-like | Interproscan |
| IPR030548 all species → | Family | DNA repair protein RAD51 homologue 2 | Interproscan |
| IPR020588 all species → | Domain | DNA recombination and repair protein RecA-like, ATP-binding domain | Interproscan |
| IPR013632 all species → | Domain | DNA recombination and repair protein Rad51-like, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46456 all species → | DNA REPAIR PROTEIN RAD51 HOMOLOG 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0000400 all species → | Molecular Function | four-way junction DNA binding | Interproscan |
| GO:0000724 all species → | Biological Process | double-strand break repair via homologous recombination | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003690 all species → | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0003697 all species → | Molecular Function | single-stranded DNA binding | Interproscan |
| GO:0005657 all species → | Cellular Component | replication fork | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0008094 all species → | Molecular Function | ATP-dependent activity, acting on DNA | Interproscan |
| GO:0033063 all species → | Cellular Component | Rad51B-Rad51C-Rad51D-XRCC2 complex | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0140664 all species → | Molecular Function | ATP-dependent DNA damage sensor activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10869 | RAD51L1, RAD51B; RAD51-like protein 1 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of XP_031564835.1 across 18 RNA-seq samples of Actinia tenebrosa. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism | 5 | 0 | 0.00 | 0.00 | |
| Tentacle | 4 | 0 | 0.00 | 0.00 | |
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Acrorhagi | 3 | 0 | 0.00 | 0.00 | |
| whole | 2 | 0 | 0.00 | 0.00 | |
| whole organisim | 1 | 0 | 0.00 | 0.00 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR2437124 | whole organism | whole organism | not recorded | not recorded | SRP063756 | 0.00 |
| SRR3193648 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3206038 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3210696 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 0.00 |
| SRR4696535 | whole organism | Whole Organism | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677495 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677502 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677522 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 0.00 |
| SRR6282389 | Tentacle | Tentacles | not recorded | not recorded | SRP124815 | 0.00 |
| SRR4677488 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677492 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677518 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677507 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677512 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677515 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR3193284 | whole | whole | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3216075 | whole | whole | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3207346 | whole organisim | whole organisim | not recorded | not recorded | SRP070917 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (ATENE_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Actinia tenebrosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 0 | not in this network | - |
| Negatively correlated | 0 | not in this network | - |
This gene has no edge at all in the Actinia tenebrosa network, in either direction — it is not one of the genes the network was built from (the network covers genes with enough expression variation across the transcriptome samples). The counts above are a property of the network, not a failed lookup.
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Actinia tenebrosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
