Detailed information of XP_031564990.1 in Actinia tenebrosa

Genomic Location: NW_022261376.1:149073...152826
NR annotation: XP_031564990.1, exosome complex component RRP45-like [Actinia tenebrosa]
Species abbreviation ATENE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4QR75Exosome complex component RRP45 OS=Rattus norvegicus OX=10116 GN=Exosc9 PE=1 SV=1
Q9JHI7Exosome complex component RRP45 OS=Mus musculus OX=10090 GN=Exosc9 PE=1 SV=1
Q06265Exosome complex component RRP45 OS=Homo sapiens OX=9606 GN=EXOSC9 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005148 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01138
all species →		RNase_PH3' exoribonuclease family, domain 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033100
all species →		FamilyExosome complex component RRP45Interproscan
IPR027408
all species →		Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR001247
all species →		DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR050590
all species →		FamilyExosome complex component Rrp42 subfamilyInterproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11097
all species →		EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000178
all species →		Cellular Componentexosome (RNase complex)Interproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0000176
all species →		Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177
all species →		Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000467
all species →		Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0016075
all species →		Biological ProcessrRNA catabolic processInterproscan
GO:0017091
all species →		Molecular FunctionmRNA 3'-UTR AU-rich region bindingInterproscan
GO:0034427
all species →		Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034473
all species →		Biological ProcessU1 snRNA 3'-end processingInterproscan
GO:0034475
all species →		Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0034476
all species →		Biological ProcessU5 snRNA 3'-end processingInterproscan
GO:0043928
all species →		Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071028
all species →		Biological Processnuclear mRNA surveillanceInterproscan
GO:0071035
all species →		Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038
all species →		Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071042
all species →		Biological Processnuclear polyadenylation-dependent mRNA catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03678RRP45, EXOSC9; exosome complex component RRP45-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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