Gene detail

Detailed information of XP_031568319.1 in Actinia tenebrosa

Genomic Location: NW_022261531.1:23389...32431
NR annotation: XP_031568319.1, hemicentin-2-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_031568319.1

ATGGTTAGTTGGTGGAGTTTGTGGGCAATGCTGCTCATATCGGGCATGCTTTCTTTATCAGATGCCGATGTATTAATTCCATTATCAGATGACCTTCTGGTCCAGGGGAAGTCGACTACAGTTTCTTGTACGGTATCAAACGGCGAAAAGTTCGTTGCTTGGGAATTCGCTAATAGTAGAATCACCATGGATAAAGCTGCCTCGGTTCATGTGGAGAAAATCAGTGATACACAATATAATCTAGTTATATCCAATGCAAAAGTCAGCAATGGCGGTGTCTACACATGTAGAGGTGACCTGGGAGGAAACAAACCCTTTACTCTGAAAATAGAATTCAGTTCAAACAATGTTGAATTAAAACAATTCCTCCGCATTGGCACTAACGACAAGATCGTAATCGGAGTATATGGATACCCCAACCCTGAATTTGAATGGAAGAAGGACAACCAGCCATTCAACCCTAACACAGGTCGCTATCGCGCTCAGTCCGATGGCACTGTACTCGTCAGTAATGTTGAAGTCGCCGATAAAGGGAACTTCAGCTTGAAAATCTCCCAAGATAACAAACGACGATCTAAGGAACTAAAGATTGAAGTCATAACCTTCGAGCCCCCAGTGATGATACAAGTGCCTTTACCAGCTTCAAGATATTTAACTGTCGGCTTTAACACTACATTCCATTGTCGTGCCTCAGGGTACCCACCGCCCTCATATCAGTGGTTGAATCCTATATTAAAGCCAGTAGACACCTTCAATCCACGATTCACTATAGATGGCGAGTACCTCTACATTACCGATGTAAAGATCAATGATAAGGGGAGGTGGACTTGTATTGCTACCAACGTACAGAAATTTACTGTTAATGCTTCTGCCGAAATCAAAGACGTGTTTGTTCGTCCAACACTTCAAGCAAAATATCTGTATGATGTGGTTGTGGAGCAAGGCGAACGAGCGACCCTAGACTGTGTTGCTGATGGCACTCCTTTGCCTAGGGTCAGATGGTTGCGTGATGGACGCTACGTCATGAGACAGCAACTGTACAGTAGACGTAGTGTTATAAGATTCAATCAAGCAACCATGCAAGACATGGGCAAATACGTATGCGAAACAACAAACGGTGCACGTGATCAAAACGGTAACGTCATTGTAGCACAGGAGACCATTGGATTGTATATTGAGTCGGCTCCAAAAATGAACGTGAAGGGAACTCCGCTTACTGTGTACTCGTATCTGGGTAACCCCAAACCGGTCTTCATCAGATGTAACTTCGAAGGCTACCCATTTCCAAACGTGACTATATGGTTTGATAACATCCAAATTGCCAATGGAACGGAAGTGGCTATTTTTGACATCATCACAAATGAGCTGGAAGATTTCGGAGAGTATTACTGCTGGTCGTGGAATGTTCATGGGTCCAAAAACGTGACGGTTTCATTGACACATGCAAAACCTCCAACGAGACCAACAAATGTCGTAGCTAATGCCACATGCGATTCAGTGATGTTGACATGGGACGAACCGAAAGATGACGGTGGCATGGTTATAGTACATTACGTACTGAATTTCGGTAACCAGCGGTGGAACACTGAAGACACCTACCCGCAATACTTTATAGAAGAACTGAAACCTGCTACTTCGTACACCATTCAAATACAAGCTCGAAACGTGATGGGCGTCGGAGATTACGAGACCGTTACCGTCACAACCAAGGAATACTGTGCACCGGGCCATCCGATACTGTGGCATCCGAGACAAAAAATGATCGAAGATACAGCGTTCTTTTTGAGGTGGCACGAACCACAGAAAAATGGAGGGGATCCTAATGTACGATATCAGGTGGTTGTATCTGAGGACCTTGAGGACGGGCCCTTTCCTATCAAGAAAGAAGAGACAGGAGTAACGGAGTTCTACGTGGATAACTTAAAGTTTGGGATGCATTATGAAATCGATGTGTATGCGTATAATCAGGGAGGATGGAGTGTGCCTGCCACCGGTCTTTACCATGTACCCGCTAAAGAAGTTCTTACCATGCAGTTAAGCAGTTCCTGTGGGCTGTCAATCAGCTTCACCTTGGTAACACTACTGCTATCAATAACATTCCTCTGGTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
O42414	Neurofascin OS=Gallus gallus OX=9031 GN=NFASC PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan