Gene detail

Detailed information of XP_031569717.1 in Actinia tenebrosa

Genomic Location: NW_022258133.1:48004...55655
NR annotation: XP_031569717.1, hemicentin-1-like isoform X3 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_031569717.1

ATGGGAGCTTTTCAATTACCAATCATGTACACTTATATTTCCTTTGTTTTCAGTGTACTTATTTTACTTCCGCCTGAAGCACATGGCGCCATAAACTCTATCATACGAAATGTTGGTCAAGATTTTGTCTTTATGTGGAACAGAACAAGTGGTAATATAGTGGAAGTGAGATGGGGATTGGTGGATCCAGTAGATAACCAAGGGATAAAACCACAGTTCATATATGTCAACAAATGGGCCAACGTTGCTGTCTATAGCGCTGCCTTGGATACCCCAGCTGCATCGAGTTATAAAGGAAGAGTTTATTACGTGGGAGACTTGCCTGCTGGTCGTGCTTGGTTCCAAATAACCAACCTTAGTATCAGTGATGCCAAGGAATATGCTGTTAGCATCTTGGAAGGAAGTGTTTACACGATATACAAAATGGGCCTGACTGTGACAGTAACTCCCCAGTTCCAGCCACAGCCACCACTGACACAGAACATAGCAGAAGGTCAAGATTTGAGTGTGCCTTGCACTGCTGTTGGTCCACCAATACCTAACATTACGTGGGTGCAGATAGTAGGTCACGTGACCAAGATTACAGGAACAGGAAGTGCAACACTGAGGATACCAAATATAAGAAGAGATCAGAATGGGACGTACGAGTGTCAGGCCAGTAACAACCCTAATGAGAATCCAGTCACTGCACAGACTGTTGTGTCTGTTTATTATCCTCCCCGAACCACCATTACTCCTCCAATTATCACAGTTGTAGAAGGTGATGAGATCGTACTCAGCTGTACAGCAGATGGTTATCCACCACCATCCATATCATGGAAGAAGGCTGACGGTGTCATCAAAGCTGGTCACACAGTAGGTGGGGGAACACTTAGAATACCTGATGCTATCAAAACAGATGCTGGGCAGTACATATGTACAGCAAAGAACGCCTACGACAGCAGAGAACACACTAACAATGCAAATGCAACTGTTATAGTTAAATACCAGCCCTTGATCATGTTGGAAAAGTTACTTAACCAAACCGTGAATGAGAGCGACTCCCTGAGTATCAAGTGCGAAGCAGATGGAAACCCACTACCAACCATCAAATGGAAGACCCCAACAGGATCTGTCCACACTGGGAATGTCTACAGCATCCCGTCAGTCAGCAAATCACATGCAGGGACATACACGTGTACAGCTAGTAACGGGATAGGGAGAGATGCAATGACCAGTATACAAGTTACTGTGCAGTATCCACCTGATATTGATGCATCAAAGTCTAGTCTTCTATTCAAGGCATGGAATGGTAAAAGTATTCGACTCAGATGTTTAGCAACTGGTTTACCTGCACCATGGATATCATGGTACAAACCAACAAATCAACAGATCACTACAGGTGTCAACATTGTACCCGGGGGTAGTGAGGTAACAGTACTGACAACTGCTGACCAAGGGGACTATGGACAGTACAAGTGTCGAGCAACAAACATCCTTGGAAGTGATGAACAATTCATCAATGTCATTCAGCTGTTTCCCCCAGGTCTTGTTACCATAAATGTTATCGAGGTAGAAGCATTATCCATGAAAATTACATGGAACAAACCTGGTAATGATGGTGGAAGACCTGTCATTGGTTACAAGGTTGAAGTAAGTACCAAGCCACCAGTTTTCACTGTGAATACCCAAGCTGTTATAACAGGACTCAAAGCAAACACCCAGTACACGGTCAAAGTGTATGCTCGGAACATTGCTGGGTATGGTCAACAACTGATGAAGGTCATCACTACCAAGAAACAAGGTAAACCAGGTGTTCCTCAATTAACAATTAGCATCAACGATACAGCAGAATTATTTATCAGATTGACATGGACAAAACCTAATGATAATGGAGGAGATCTAATCAAGTTTACCATCTACATGAAAGAGGATGATGAATTTAATTGTACAAAAGCAAAGGATATCCTTGATTTATCAGTTCTGGAGTATACATTAAGAAAAAGTGTTGATTACGGAAAGAACTATACGTTTCTAGTGACTGCATGGAATAAATACGGAGAAAGTATGAAAGATGATGTGATGGCGAAGACAATATCCATACCTCAGATTAAACCAACATGTGAAACGAACACACGTGGTAACGCTAAGACCAGTATTGAGGACACAAGTGGAAAACACTCAAAATGTCAAGATGTCATCKAATGA

Transcript

Protein

Uniprot

Uniprot term	Description
P13590	Neural cell adhesion molecule 1 OS=Gallus gallus OX=9031 GN=NCAM1 PE=1 SV=3
P13591	Neural cell adhesion molecule 1 OS=Homo sapiens OX=9606 GN=NCAM1 PE=1 SV=3
P16170	Neural cell adhesion molecule 1-A OS=Xenopus laevis OX=8355 GN=ncam1-a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06491	NCAM, CD56; neural cell adhesion molecule	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala