Gene detail

Detailed information of XP_031570147.1 in Actinia tenebrosa

Genomic Location: NW_022261626.1:240...5545
NR annotation: XP_031570147.1, E3 ubiquitin-protein ligase listerin-like, partial [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_031570147.1

GTCTGGTGTTTGGGTGTTCTTGGAAGTAAAGATAGTACTAAGAACTTGTTACCATCTCATCTTACACACTCTCTTCCCAACATTTACAATCTCCTCCAAATCACCTCACTCACAGCACAAGACCTTATGGAATTCCTGGAAAAGAACGAACTACAACTGACTTTATTGGACAAAGCTTTGACCATGTCCAGAACCAGTGGGTTTCTCTGCACCTTAGTCCTGCAGAATGTTATGTCATACTTAATAAAGAAAGAGATTGATGTAGACTGTGGTKTAATACTGGCAACACTACAAGAATCTTTATCACTGGAGATGTCTGAATCAGTATTGCAGAGTATTACTACTGTGATACCATTTGCCGATAATATATATGATGTAAAAGTGATCACTGAAAATAACATTAGACTATTGGGACAGGAATTGCAAATACAAGAGTTCGCAGCTGTGTTTTCAGTCCTTRCTGCCTGCCTGGAAAAATGGTCACTGTTGACAGACAAGAGAGAAGAAGCAGTAATGGAATATCAACTGACTTTTACAGAAGTACTTGATGGCATGCTGGAGTGGAAGAATAGGAATGATAGAATATTGCTACTTAATGCAAATATAAAAGATGCTACTATGGCAGAGGTGACTGTGAATACTGCCATTATGAAGATAATTAGACTTGCCATCACAGATGTTGCAAAGTTATTGAGCTCAAATGTGTGGGATTTCATTCTGTGTGGATTGGCTGGATGGCTACAGACTTGTGAAGAAAACCTGTCGACAGTCAGTASGTCACTATCAAGTACAATCCTGTGCAGCCAAACCTGCTCTCTTCACTCAAACGTGTCAGGGTTTTTTGAAACATTCCCAGACAAACCATCAAGTGAAGAGACCAAGGATCAAAATACAGAGACAACGGCAGCTGAGGGTGATGAWATGACACCTGATGGGGAGTTTCCYGCTGATCTGTTCAGCGAATGGAAGGAATTCTTCAGTGTCAATCTGCACAGCACTGTCCTTTCTTYGTTCTTTACCATGGCAGGGAAATACAATAATAGTAGTTTCCACATCACCCTACCTGTCATCAGAACATGTGAGAGCCTTGGCMAAGCTGTCATCAACACACCTATCAAGATATTACAAGAACACAAGTATGTGTTACCAGCTGGCTCTTCTGAGGAGGATGATACATTGCCGCAGTGGGCTCAGGACMTGCTTTCTTGCTTGCTCCCTTTGTTAGAATGTGAGGTACTTTCTTTACAGATTGCAGCTTATAAACTGTTGGCAAAGATAATGCCAACCCTTCCTTCTTGTCACAAACATGAGTCAAGCAGCAAAGAAGAGCAAAATGAAATTGAAAGGTCTCCACCATCACAGTTAATGAACACCATYAACACCAGCTTATCACACCTGGATACAATCATGAAGGACGCCGCTGTACCTTTTGGTGGTCAGCTGTGCTTAGCAACCGACATAGAAGCTCGGCGAATAAGCCTTACATTACTTCTGTCCTCAAGACTCCTCATCCTGTTCTTCAAAAGTGCAAGCTTTGAAAACAGATCAGAATACGCTGTTTACTTAAGAAAAACAAAGCTCATTGACAGTCTTATGAGCACGCTTTATCGCTTGATGCCTCTGGACTGTAAGACTGTAGTCACCGATGACTATGATGTATCAGTTGATGATTGTGTTACAGAGAGTTTGGTGCAGGATCTTGGGAGGTGTGTGTATTATAGTGTATTGCACTGGATGCCTGCGATGGTGCGGCAGTGGTTTAATGCCTTGGAAAAGAAATATGCTACTGTAGTAGACAGGTACACATCATCAGCTGTCACACCGTCACTATGCCAACGGGAAATGCAACAAGTAAAAAATTCATCAGTCCAGTTCACTAACATGCAAGTCAAGACWCGCCCTGTGGCAGGTGAGGTGGCGGCAGTCTACACCATAGACGAGATCTCCATGGAACTTGTCGTCAAAATTCCTAATAATCACCCCTTGGGGGTGGTGAYGGTCGACAGCGGGAAGAAAGTTGGAGTGACTAATTCACAATGGAGGAGTTGGATACTACAGATGACGACGTTTCTTACTCATCAG

Transcript

Protein

Uniprot

Uniprot term	Description
O94822	E3 ubiquitin-protein ligase listerin OS=Homo sapiens OX=9606 GN=LTN1 PE=1 SV=6
E1C231	E3 ubiquitin-protein ligase listerin OS=Gallus gallus OX=9031 GN=LTN1 PE=3 SV=1
A0JM49	E3 ubiquitin-protein ligase listerin OS=Xenopus tropicalis OX=8364 GN=ltn1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR039795	Family	E3 ubiquitin-protein ligase listerin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12389	ZINC FINGER PROTEIN 294	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan