Gene detail

Detailed information of XP_031570548.1 in Actinia tenebrosa

Genomic Location: NW_022261649.1:326742...344154
NR annotation: XP_031570548.1, GRAM domain-containing protein 4-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_031570548.1

ATGTTAAAGTCGGCCTTACGAAACAGAATGTCTAAAGGCACAGATAAATCATCTGAACATCAACAAAATAACCAGTACTCTGATACTAGTAGTGAAGACGAGTATTATGACTTGAAAATGGAGTATTTACAAGACAGTGACTTGTTAGATGAAGCAGAAGTTCACACATCAGAAAAGGCAGATAAAAGCTCGTCTGGCAAAGGAAAAGAAACAGTAAAGCTTTCCGAAGATTCAAATGGCAATTCCCTATCAGAGTCAGAGATGAATTCAGCATCAAACGAAAAAGATTCGATGAGGAAAAAGGCTCCTGATCAAAGTGCTCAAGAAGAAAAAGGCTTTCCTAATTCAGAAAGAGAGATCTACGAAATGCAGCTTGTACAACTTCAGGAACAACTTGTTGCTACTATTATATCAGAACAAGAGAAAGATGAACAGCTGATGAAGTACCAACAACTTGACATTGAAAAGCTACAAAAGAGCTTGAAAGAGGAACAAGAAAAGAATGCTGATCTCACAGACAAGCTAAAGATCCTGAAAAACAAGGTCCAAAATTCAAAATTGGGAAGAGTAAATGCAAGCAAGTCGGATCCAAGAAAGAAATCTAACCGAAATTCTAAAAATCTTGAAAATGAGTTAAACCAAGATGAAGAATGGACGGACATCAGTTCAGAGAGGAATGCAGAGGATGTTGGCCAAGAAAAAGAAAAATCTGATGACCAAGATGTGCCAAGGTCTGCTAGTGAGAGTAGCTCAAATCCTGAAGGGGAAGATGAAGATGCATCAAGTGCATTTGATTTATCACGTTCTAAATCTGTAAAAGATAAGCCAGATGGATTTACCAAACCAACCTCAAGATTTTTTGCTGTAAAGAACTACAAAAACAAGGCAGTTGAAATGATTGTTGAAAGGCTGTGGGATTTTGTTAATGAGGAAACAGAAACAACTGAAGATGATAAAGAAGAAGATGCTCTTTCGGTTAAAAATTTGAAAGAAAGCATCAACAGATTCTCAAAGGCAATCAAGCCTATCAGCAATTTTATTAAAGGTGTACATAAGCTCATGTCCTGGAACAATTTTGCATCTACCTGTCTGGCATTTATAGTTTACATGTATGCAGCATTTTTTGGCTACCTGTTTTCTCTCGTTCTTCTGATAGCTATTTGGAAACTTTTCATGAATTACCTCTCAGCCAGAGGAATAACTGCTCAGATTGGACTAGAAGCAAAAGAAAAAAAAGAGGAGACAAATGATGACAAAAGTTTGTCAGACAAGTTTCAACTTGTTTTGGAGGTCGCGAAGAAAGTTCAGAATACGTTAGGAAAGATAGCCGATTCCCTTGAAAAAATAGATAATCTATTACTGTGGCAACACCCAGCAACCAACACGCTCTTTTTTAACATCTGCTTGTTGTTTATTGCGTCACTCTGGCTGAGCGGACCAACTATGTTCATGTTCATGGCTCTTGGATTTGGAATAAAAATTTTCATCTTAGGACCATTGTATGATAAGTTCCCCAAGGTTAAAAAGCGTTACGATACTCTTGCTCGTGTTTGGAGTGAACTCCCAAGTGATGCTGACTTAGTGACACGGGAAGTAAATACCGCTGATCAGAACACCACAGACGCGTCTGGCTCGAATGGTGTGGATCATAATGCTTCAGGACGATCTTCACAGAGCTGGATTAATTTCTGTGAGAAAATGAAGATTCCTTCATCAGAAAATCCGCTCCCATCCTGGGAACAAGGTCACCGCTGCACATTGATAAACAAAGACCATCCGCTGACCAACATGAAACATGGCAGGCTCTACTTAACACAGAATCTTTTGTGCTTTGAGAGAAACAAGTCCTCTAAAAACATCGTAATAAAACTGGAAAACATCTTAAGAGCTTCCAAGCCGTACATTTTTGCAGCGTTACTTGGGCGAGACGACGTTTTTGAAAGTTTAATGCTGACTGGCAAAGCAGCAAGCTATCGATGGGCATGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RV80	GRAM domain-containing protein 4 OS=Xenopus laevis OX=8355 GN=gramd4 PE=2 SV=1
Q8CB44	GRAM domain-containing protein 4 OS=Mus musculus OX=10090 GN=Gramd4 PE=1 SV=1
Q6IC98	GRAM domain-containing protein 4 OS=Homo sapiens OX=9606 GN=GRAMD4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06398 all species →	Pex24p	Integral peroxisomal membrane peroxin	Family	Interproscan
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR010482 all species →	Domain	Peroxin domain	Interproscan
IPR037847 all species →	Family	GRAM domain-containing protein 4	Interproscan
IPR004182 all species →	Domain	GRAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37402 all species →	GRAM DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0034164 all species →	Biological Process	negative regulation of toll-like receptor 9 signaling pathway	Interproscan
GO:0043280 all species →	Biological Process	obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23554	GRAMD4; GRAM domain-containing protein 4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.