Gene detail

Detailed information of XP_031571237.1 in Actinia tenebrosa

Genomic Location: NW_022261693.1:57087...60844
NR annotation: XP_031571237.1, ubiquitin domain-containing protein 1-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q640W6	Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV=1
Q5EAE3	Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1
Q8WUN7	Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008889 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16455 all species →	UBD	Ubiquitin-binding domain	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR032752 all species →	Domain	DC-UbP/UBTD2, N-terminal domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR039869 all species →	Family	Ubiquitin domain-containing protein 1/2	Interproscan
IPR038169 all species →	Homologous_superfamily	DC-UbP/UBTD2, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13609 all species →	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_031571237.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031571237.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

215.4Max TPM

98.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	5	104.98	186.07
Tentacle	4	4	156.37	215.41
Mesentery	3	3	32.63	38.74
Acrorhagi	3	3	98.64	119.52
whole	2	2	78.75	79.14
whole organisim	1	1	71.81	71.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	186.07
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	112.51
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	102.56
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	72.99
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	50.77
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	215.41
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	198.52
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	157.63
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	53.93
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	38.74
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	32.20
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	26.94
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	119.52
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	94.76
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	81.65
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	79.14
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	78.37
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	71.81

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.