Gene detail

Detailed information of XP_031572829.1 in Actinia tenebrosa

Genomic Location: NW_022261793.1:266828...274218
NR annotation: XP_031572829.1, trichohyalin-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_031572829.1

ATGCATCGGTACCAAGGAAATGTTAGCTTCCGGCAAATTGCAGTTCATATGATCAGCCGGTGCTTGGCCAAGTGTTACCGTTTTTTCCTACCCAGGAAAATGCGAGACCCACTCAGAAGGTACCGACAGGTGTACTTATCTATTCTTCTGTTTGCTCTCTTCAACATAGCATTTTGGGCAGGATTTTTGTCGTCTCGTTTGAGCTACGAGCAAAGAACAACTGATCTAAGTGACGTGCACACGTTATCGGAAGGCCAAAGTAAGCAAGAAGATTTGCAAATATTGAGAAAACAATGGGAAATGAATAACAGAAGAAAATTGGATAATCTGAAGTTTCATAAAAGAAAAAGAAAATTGAAGTACAAATATTATGATGGGGCAAATCCTACCGGAAGTAGCGGAGAGCAAAGAGACGGAGGACAAAGCCGCAATAATGAAGTAAATCCAAGTATTGAACAAATGCAGGGGGAAATAACTAATGCATGGATAACAAATGTACCAATATATACTAAAGGGAAATTCTGGGACAAGGTCTCGAAAGAATCTAAAACGAATGCCCCTGTGTCAATAGAAGATCGTTTTAAGAATTTTGACAAAGAAAATAGCATTTTTACAAATAATGACATTAGAGAGAAGAATGACGAAGGTGCATTTTCTTTGCCAAGTCAAAAAGCAAAAGTTAAAGTCAGCCCAATTGAAGAAAGACAATCCATAGATGATGATAAGTCAAGACGCGAGTCGATCACTGAAGGAGATGACGAAGAGAATGTACAAATCCATGAATTCAAGGTAAAAAACACTCAACATGAAAAACAGACTGTATCTGAAACAATAGATGAAACGAAGGAAGAAAGGCAAGAATATTCACGAACTGATGACAACGCAGTAGAAATAAAGTCTGCCTTTCCAAGCTACACGACTAATCCTCCACAGCCAGCATCTAAAGATGAAAAGAAAGAGGATGAAAGATCGGTAAAAGATGAAACGGAGGACCAGAAAGATGAAAGCGAGAATGATAAAGGGGTAAAGTCTGTAATTACTAGTTACGCCACTGACTTCCGTAGACCACAGTCTGATGACAATGAAAGGAAAGAAAACGAAAGTCCAGCAGCAGATGAGACGGAGGACGAGGAAGATGAAACGGATGAAGAGGTTTCTCCGCTCACAAGTGTAAGACAAAAGGATGGGACAGTGTTTTCTCACGAAGAAATGCAACATAAGAGAGAACAACTTCAGAAAAATGAAAGTTTAAGTGATACTAAACAAGTTGAAGATCAGGATGACATTCAAAGACGTAATGAAGTGGATAGAGAGTCTCAACCAGATACAGTTCAAAATAGAACTCAACACCAAAGCCACACAGATAAGAGCGAAGGTGACGATGGATCAAAAAGCCTAACCACTGTTAATCACGATCACCACGAAGCAGCAGTGAATGAGGATACGAGAAGAGTAAATCACGATTATAAAGACGACCAGCAAGAGAAAAATTCAAAAGATAGTACAGAAGAAAATAAAGGGGGCAATGGAAACGTGCATGGACAAGAAAGCAATCCGATGGACAATCGTAAAAGGAAAACCAAAGACAACGAAGATGAAACAAAAGAAAGTGAAGATAATGATGAACATAATGAAAACCCGCAAAAAGCAGATGATGTGAGCAAACAAAAGCGAGATATTGACCAAAGGCAGAGAAAAGACAAAAACGAAGTCACAGACAACGAAGACGCGAGAGGGGAGATGCAAGGTAAAGAAATGCAAGGTAAAGAACAGCAAAGCATGACCGAAGAAGAGACAAGGAAACAGCATGCGCAACATCAACAACAGCCAGAACAGCAAGAAAAAACACAGCAACAACTCCAACAACAGCAACAGCAGTTCCATCATCATCATCAGCAGCAGCAATTCCATCAGCAGCAACAACTCCAGCAACAGCAGCCACTCCAGCAACAACTCCATCAGCAGCAGCAACATCAACAACTCCATCAGCAGCAACAGCAACGACTCCAGCAACAGCAGCCACTCCAGCAACAACTCCCTCAGCAACAACTTCATCAGCAGCAGCAACAGCAACGACTCCAGCAACAGCAGCCACTCCAGCAACAACTCCATCAGCAACAAGAGCAGAAGCAACTCCATCAGCAGCAGCAACAGCAACGACTCCATCAGCAGCAACAGCAGCCACTCCAGCAACAGCAGCCACATCAGCAAAAGGAGCAACAACAGCCCTTCCAGCAAGATCAGCAACAAGTCCATCAGCAGGAGCAACAGCAACAAGTCCATCAGCAGCAACAGTCTTTACTCCATCGGCAACAACTCCAGCAGCAGCAAGTACAACTACAAATACAGCAACAACAAAAACAACTCCAGCAACAGCAGCCCCACCAGCAACTTCAGCCGCAACAACTCCAGCGGCAGCAACAAAAACAACATAAAGAAGGAAGTGACAATAACGRTTCAGAAAGACAAACGGAAACAGATAAACAACGAAACGGAAACCAAGTTAAAGGACAAGAAGAATCGAACGATTTAAAGGCAAGAGAATCTAAAAGAGAAAAGCAGAGCAGAAACCCAAGCGAAAGACAAGAAATAGAAAAGGAAGAAGAGAAAAGGCAACCAGTGAAAGAAAAACAACAAAACAGAAAACCAAGCGAGAGACAAGAAAAAGTCGAGGAAGAAGAGGCTAGGAAACAAGAAAAGCAAGAACAACAAAACAGAAAACCAAGCGAAAGACAAGAAAAAACGGCTAAGCTGGAAGAAGAGGGAAGACAACAAGCCAATGAAGAAAAGCAAAACGAGAATCTGCAACAAGAGCGGAAAGTGGCGAGTAAAGAACGAACGCAAGCACAAGAAGATAAACGACTAAACCATGAAAATAGCGACGAAAATATAGAAAGAAACCAGCAAGAAGAGGAGCAAAGTAGAAAGCGTGGACGCGGATCTGAGAGCTTAAAAAGGCGGGAAAATGAGAAAAATGCCAATCAAGAAACAGGAAGGAAAGACGAGTCTAGTCTCCAACATCCTCTCATGCCAAGTGCAACAAAGAAAACAGGGATTTTGAAGCAACTACCCTTAATAGACATGGAGGACCTGGAGGACAAGAGACCAAAAGTTCTTATCGTTATATTTGTTTTATCGTCCGCTTTAAGGTACGATAGACGTCAAGCAATACGGGACTCGTGGTGGACGAAATGTAAAGAACCACAGGCTGCTTGTATGTTTGTAACCGACGGATACATCGATGAAACACTTCACGATGGGCTTCTAAAGGAAAAGCAAGCATACAACGACATTCTCTTTCTTCCTGTCGACGAAGGCCTTAACTTTGGAATGCGCCTATTATTCTTGATGGAATGGGTTCAAGCTAAATATAACCCTGAATTTTTTCTTCGTATTGACGACGATTACTTTCTTTGTATCGAGCGGTTGTTACACGAGCTGCCTCAAAGACCTAAAACGAATCTGGTGTGGGGATTCTGGCATTGTGATCTAACTACAGTGGTTTTTATAGATGAATCTTTTATTCTCTTGTCTTATGATTTAGTCGAAAAATTTCTTTCTTGGGACGAAAAAACGTTACTGTGTCATCCTTTTGGAGACCAGCAGCTTGGAATTTGGTTGAACTCTGTACCAACTTTCAAGGGATTTTTTGATGCACGACTCCATCACGATCCCCCTGCATCTAAGAATTCTACTATTAGGAACTTGAATAACATTTGTGATAGGTTTMTAGGTCTACATGGGACATATCCTGAGGACATGAGGAGATTCTGGTTAAGAGGTAACGACGGGAAGAAGACAGTGACTAAATTGTACCCTTTATACCCAAACGCTTGTCACTATCGTCCATATTTTAAATGGCAAGACATAAAACCAAGTTTTAGATACAAGCCTGAGTTATGCAACAAAAATCCGAGATGGGAAAATAAAAGAGAAATGTGGACAGGAAGACAATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000272 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01762 all species →	Galactosyl_T	Galactosyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002659 all species →	Family	Glycosyl transferase, family 31	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11214 all species →	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0006024 all species →	Biological Process	glycosaminoglycan biosynthetic process	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0035250 all species →	Molecular Function	UDP-galactosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_031572829.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031572829.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

7TPM > 0

6Conditions

3.5Max TPM

0.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	3	1.22	3.47
Tentacle	4	3	1.54	2.46
Mesentery	3	0	0.00	0.00
Acrorhagi	3	0	0.00	0.00
whole	2	0	0.00	0.00
whole organisim	1	1	1.81	1.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	3.47
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	1.89
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	0.73
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	0.00
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	0.00
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	2.46
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	2.43
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	1.26
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	0.00
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	1.81

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.