Gene detail

Detailed information of XP_031573370.1 in Actinia tenebrosa

Genomic Location: NW_022261834.1:42913...60223
NR annotation: XP_031573370.1, ATP-dependent RNA helicase ddx24-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_031573370.1

ATGGCAGAAAATCCAAAGAAAAGCAGGAAAAGAAAGTGGAAAGAGGTTCCTTTAGATAACCCAGCATTTTTTAGTGGTAATATGGAGGGATTTGTCCAGCTTGAAGAGCTTCAAGACTACACGTTCGAGAGTGTTGGTACAGAAGGCTCGCGTGTTGTTGATACTGATTTTATTGCTAGAGAGGAAACTAAAGGGAAGAAGATGCCTAAAGTGGAGAATGAAACCAAGAAGGAAAAAAGAAAGAGAAAAAGAAAGGAAAAGCCAACCAAAGACTTAACTAAAATTGATAAACTAAAAGATGGCGAAAGTAAGCCTGAAATAGCTAATACTGATTCTACTACTGGAGAGGAATCTGAAGGAAAAAAGCATCCTAAAATGGAAAATAAAACCAAGAAAGCAAAAAGAAAGAGAAAAAGAAAGAAAAAGCCAACCAAAGACACATCTAAAGCTGATAAACCAATAAATGAAGAAGATAAGCCTGAAATGATAGAAGCAAATGAGAAGATGAGTCAAAATGAATCACAACAAAACATCAAGAAAGGAAGGAAGCTGGATGATATGAGTGACTGGAATGGTCTTGGTGTCCCAGATGATGTGTTGAAGGCATTAAGTGAGCATGGATTTACAACACCTACTTCAATTCAAGCACTTGCTATTCCTCCTGCCCTATTTCACCACAGAAACATYGTTGGTGCTGCTGAAACAGGTTCAGGCAAAACACTAGCATTTGGTATCCCTATCATTCATCATATCATGGCCGTCAAAGAACGTACAGYTAACAAGACCAACGATGATAGTAAACATGAAACAGAAGATGGAGAAGACAATGTTAAYGAAAACCCTCTAATGGCACTGATAATGACTCCTACAAGAGAGTTGGCCTTACAGATCAAGGACCATCTTGTTGCCGCAGCAAAATATACACCTATTAAGGTTGCTGCAGTGGTTGGAGGTATGGCTGCTCAAAAACAGCTACGATTGTTGAAAAAGCATCCAGAAATTGTGGTTGCAACACCAGGCAGATTATGGGAAATGATTTCATCGCAAGAGGAACATGTGAGTAACTTGGAGCACTTGCGGTACTTGGTGATTGATGAAGCAGACAGGATGATTGAACAAGGACACTTTGAAGAACTATCATCTATACTGGATGCTATACACTTCAAAAAAAGTGCAAAATCGTTTGATAGCTGTTATCCAGAAGAAGATGTAAAGATCATAAAAAACACATCAACAGAAAAGTTTCAAAAGTTCATTTTTTCTGCAACCTTAACATTTCCCAAGTCAATCAGGCGAAAAGGAAAAGATTATGTATTGTCAACTGAAGATTTACTAGTTCGTCTACTGAACAAGATGAATATCGATAGCAAGAAGGCAAAAATTATTGATGTTACAACGAAGAAAGGGACGGCACATACACTCACTGAAGCTAGAATAACATGCAGCAAGGAAGAYAAGGACGCATACTTGTATTATTTTCTACTAAAGTACCCAGGAAGAACTTTAATCTTCGCSAATACCATCGACTGCATCCGACGACTTGCCTCCATACTCAGATTACTGCAGCTCAATCCTTTGCCTTTGCATGCCAGCATGCAACAAAGACAACGACTCAAAAACCTTGACAGGTTTAAATCTTCAGAAAATGGTTTACTCGTATCGACAGACGTSGCAGCGCGAGGACTAGACATCCCCAATGTACAACACGTGATACATTATCAAGTCCCAAAGGACCCAGAGGTTTACATCCATCGTAGTGGACGGACAGCACGGGCATTAAACGAGGGTCTCAGTGTGGTACTTGTTGGACCTGAGGATCTGGCCTCGTACAGGAAGATCATGAAAACTCTTAATAATGGTAACGAACTGGAGTCCTTCCCAGTAGATGTACCATATATAACAGACGTTAAATCTAGGATATCACTGGCTAGAAACATCGACAAGGAACAAAACAAAATCCAAAAGAAGAAGTCAACCAATGACTGGTTTGTGGCATCAGCCAAAGCGATGGATATTGAAGTGGATGACGACTTACTCGAGGATTTAGGAGACTCGAGAGAGAAAAAAATTTCCAACGAAAAGCGGAAAGCTAGTGGTTCCAGGATTACAAGATGAATGTTCAAATACAAACGATGTTGTCAAGACAGCAGTAGATGACGTTAAGAAAAAGAAAAAGAGAAAACGACAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CQ91	ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=MAK5 PE=3 SV=1
P0CQ90	ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=MAK5 PE=3 SV=1
Q9ESV0	ATP-dependent RNA helicase DDX24 OS=Mus musculus OX=10090 GN=Ddx24 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003974 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031 all species →	RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14805	DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.