Gene detail

Detailed information of XP_031574009.1 in Actinia tenebrosa

Genomic Location: NW_022258170.1:214851...222724
NR annotation: XP_031574009.1, S-antigen protein-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
J9VHE9	UHRF1-like protein OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) OX=235443 GN=UHF1 PE=3 SV=2
Q7TPK1	E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus OX=10116 GN=Uhrf1 PE=1 SV=2
Q8VDF2	E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus OX=10090 GN=Uhrf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001761 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02182 all species →	SAD_SRA	SAD/SRA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003105 all species →	Domain	SRA-YDG	Interproscan
IPR036987 all species →	Homologous_superfamily	SRA-YDG superfamily	Interproscan
IPR045134 all species →	Family	UHRF1/2-like	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14140 all species →	E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0010216 all species →	Biological Process	obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10638	UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1	EC:2.3.2.27	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031574009.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

6TPM > 0

6Conditions

4.0Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	3	1.62	4.02
Tentacle	4	2	0.31	0.98
Mesentery	3	0	0.00	0.00
Acrorhagi	3	0	0.00	0.00
whole	2	0	0.00	0.00
whole organisim	1	1	1.68	1.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	4.02
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	2.75
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	1.31
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	0.00
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	0.00
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	0.98
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	0.26
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	0.00
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	0.00
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	1.68

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.