Genomic Location: NW_022261912.1:13137...26786
NR annotation: XP_031574461.1, high mobility group protein 20A-like isoform X1 [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families
| CDS |
| XP_031574461.1 |
| Protein |
| XP_031574461.1 |
| UniProt accession | Description |
|---|---|
| Q9NP66 | High mobility group protein 20A OS=Homo sapiens OX=9606 GN=HMG20A PE=1 SV=1 |
| Q9DC33 | High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1 |
| Q5ZKF4 | High mobility group protein 20A OS=Gallus gallus OX=9031 GN=HMG20A PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002175 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00505 all species → | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| PF12874 all species → | zf-met | Zinc-finger of C2H2 type | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009071 all species → | Domain | High mobility group box domain | Interproscan |
| IPR036910 all species → | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR051965 all species → | Family | Chromatin Regulation and Neuronal Gene Expression | Interproscan |
| IPR036236 all species → | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46040 all species → | HIGH MOBILITY GROUP PROTEIN 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0010468 all species → | Biological Process | regulation of gene expression | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24660 | HMG20A; high mobility group protein 20A | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of XP_031574461.1 across 18 RNA-seq samples of Actinia tenebrosa. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism | 5 | 0 | 0.00 | 0.00 | |
| Tentacle | 4 | 0 | 0.00 | 0.00 | |
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Acrorhagi | 3 | 0 | 0.00 | 0.00 | |
| whole | 2 | 0 | 0.00 | 0.00 | |
| whole organisim | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (ATENE_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
