Gene detail

Detailed information of XP_031574463.1 in Actinia tenebrosa

Genomic Location: NW_022261912.1:35254...40824
NR annotation: XP_031574463.1, signal peptidase complex catalytic subunit SEC11A-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P67810	Signal peptidase complex catalytic subunit SEC11A OS=Bos taurus OX=9913 GN=SEC11A PE=2 SV=1
P67811	Signal peptidase complex catalytic subunit SEC11A OS=Canis lupus familiaris OX=9615 GN=SEC11A PE=1 SV=1
P67812	Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens OX=9606 GN=SEC11A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006582 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00717 all species →	Peptidase_S24	Peptidase S24-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001733 all species →	Family	Peptidase S26B	Interproscan
IPR019756 all species →	Active_site	Peptidase S26A, signal peptidase I, serine active site	Interproscan
IPR019533 all species →	Domain	Peptidase S26	Interproscan
IPR015927 all species →	Domain	Peptidase S24/S26A/S26B/S26C	Interproscan
IPR019758 all species →	Conserved_site	Peptidase S26A, signal peptidase I, conserved site	Interproscan
IPR036286 all species →	Homologous_superfamily	LexA/Signal peptidase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10806 all species →	SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006465 all species →	Biological Process	signal peptide processing	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0005787 all species →	Cellular Component	signal peptidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13280	SEC11, sipW; signal peptidase I	EC:3.4.21.89	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031574463.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

11TPM > 0

6Conditions

64.3Max TPM

18.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	3	34.22	64.29
Tentacle	4	4	19.28	31.16
Mesentery	3	2	6.63	10.25
Acrorhagi	3	1	6.53	19.59
whole	2	0	0.00	0.00
whole organisim	1	1	50.17	50.17

Per sample · hover a bar for the full sample record

Show the sample table (18 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	64.29
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	61.80
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	45.01
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	0.00
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	0.00
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	31.16
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	22.45
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	13.91
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	9.61
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	10.25
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	9.65
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	19.59
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	50.17

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.