Gene detail

Detailed information of XP_031574467.1 in Actinia tenebrosa

Genomic Location: NW_022261913.1:29559...41844
NR annotation: XP_031574467.1, hippocampus abundant transcript 1 protein-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70187	Hippocampus abundant transcript 1 protein OS=Mus musculus OX=10090 GN=Mfsd14a PE=2 SV=3
Q96MC6	Hippocampus abundant transcript 1 protein OS=Homo sapiens OX=9606 GN=MFSD14A PE=1 SV=2
Q5SR56	Hippocampus abundant transcript-like protein 1 OS=Homo sapiens OX=9606 GN=MFSD14B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006361 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR005829 all species →	Conserved_site	Sugar transporter, conserved site	Interproscan
IPR001958 all species →	Family	Tetracycline resistance protein TetA/multidrug resistance protein MdtG-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23504 all species →	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_031574467.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031574467.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

42.4Max TPM

20.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	5	17.21	22.61
Tentacle	4	4	35.33	42.43
Mesentery	3	3	9.85	12.08
Acrorhagi	3	3	15.40	20.08
whole	2	2	16.53	18.18
whole organisim	1	1	30.90	30.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	22.61
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	22.34
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	20.11
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	13.11
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	7.88
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	42.43
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	41.96
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	39.27
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	17.66
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	12.08
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	10.05
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	7.42
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	20.08
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	14.08
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	12.05
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	18.18
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	14.88
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	30.90

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.