Gene detail

Detailed information of XP_031574495.1 in Actinia tenebrosa

Genomic Location: NW_022261915.1:23700...28909
NR annotation: XP_031574495.1, surfeit locus protein 1-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57593	Surfeit locus protein 1 (Fragment) OS=Takifugu rubripes OX=31033 GN=surf1 PE=3 SV=1
Q800L1	Surfeit locus protein 1 OS=Gallus gallus OX=9031 GN=SURF1 PE=3 SV=1
Q15526	Surfeit locus protein 1 OS=Homo sapiens OX=9606 GN=SURF1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007308 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02104 all species →	SURF1	SURF1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002994 all species →	Family	Surfeit locus 1/Shy1	Interproscan
IPR045214 all species →	Family	Surfeit locus 1/4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23427 all species →	SURFEIT LOCUS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0033617 all species →	Biological Process	mitochondrial cytochrome c oxidase assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14998	SURF1, SHY1; surfeit locus 1 family protein	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031574495.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

8TPM > 0

6Conditions

12.3Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	3	4.60	9.18
Tentacle	4	3	5.36	8.21
Mesentery	3	0	0.00	0.00
Acrorhagi	3	1	4.09	12.26
whole	2	0	0.00	0.00
whole organisim	1	1	8.90	8.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	9.18
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	7.30
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	6.53
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	0.00
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	0.00
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	8.21
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	8.01
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	5.24
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	0.00
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	0.00
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	12.26
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	0.00
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	0.00
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	8.90

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.