Gene detail

Detailed information of XP_031574591.1 in Actinia tenebrosa

Genomic Location: NW_022261926.1:85731...104332
NR annotation: XP_031574591.1, terminal uridylyltransferase 4-like [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_031574591.1

ATGGAAAAAGAAGCTAGTAAAGAGGATAAAGATAAGTGTACAGAAGCAGAGATGGAGAAATCTTTTGTAAACAACCAAGATGTCAAAATTGGATCTGAAGGGACACGAAGTGGATCCAGTCAATCACAGCCTAAAAATGACGTTCCTAACACAAAGCAGCCTAAAGTTTCTGAGGCGATGATTAAAGATTTAGAAGAGCAGAACTTCATAAAACTGGTATCAAAATTGAAGTGTCCTGAAAAATATGGAAACAATCAGTTTTATTGTGAAGTCTGCAATAATTTAGTGGAAAAGATGCAGGATGTGAAAAACCACATATCTGGCAAGGGACATAGGAAGAATAAAAAGACTAAAGGGCCAGTGTTAATAATGAAGAGAATTGATCAGCCCTCACCTAAACATATTGAAGCCTTGGAGACAATGTTAGAGTCTGTGATTCAAGAGTATGGTCTAGACCCTGACAAAGACTTGAATGTCAGATTACAAGTTAAAGATGAAATACAAGAGATTGTGCAGTCTCATATATCAGGTAGCTACTTGACTCTCTATGGATCTTCACTAACATGTTTTGGATTCAAGACTAGTGATGTTAACTTGGACCTGACTCTTCCTGAAGAAATTACAGTACCTCAGGGCCTCATCAAGCTGTTCGACATCCTTGAAAAAAATGATCTATGTATTAATGTTAAAGATGAATTTGATTTGAATGTGCCTCAAATATCTTTTATCCATAAAAAGACTGGTTTAACTTGCCATCTCAGTTGTGGAAGTAAAATGGTTTGTAAGACTTCTGAACTGCTAAAAAAATATGGAGAAATCAACCCTGTTGTGAGGAAACTGGTTGTTGGTTTTAGGTTCTGGGCACAGTGCTGTTGCATTGATAAGACATCAGATGGTGGTCTAGCTCCATATTGCTTCGCTCTAATGGTAATACAGTTTCTTCAGTGCACAAATCCACCCATTTTACCAAGACTGAATGTGCAAGCGGAAATTACTGGTGATCAACTTAAGTTCAAAACATCAAATACTGCTTCTCTGGGGTTATTATGGTTTAAGCTTTTCAGATATTACTGTGTAGAGTTTGAAATAGATGAGAATGCYGTGTCTATAAGAGTGAAGCAGCCATTTTGCAGGGAGACCAGGAGATGGGGTCGTAGGAGATTTGCAATAGAAGATCCATACATGACAGGTCACAATGTATCAACTGTATCCAGCGATAAAGTTTTTGACTATATTATACATTGTATGCATACATCATTTGTGTACTTTGGAACACCTCAAAAAGGAATCGAAAAAGAAGCAAATAATAGATCCGTAAGCGAACCTATTTCTGCCTCACAACAAAGACGTTCAAGACAAGACAGTGATGAAGTTGAAGTTTATGAGGAAGTATCAGATGAAGATAGCCAAAATGGCAAACCTGGAGCTAGAAAAATAAGCTCTGAAAGAAAAGTACAGGAATCAAATGATGACGACATATTCCAGATGGATGACTTGGAAGATGGCGAGGGCGTGGCTGTTGGGGGTGAAGGAGGGGCTACCAAAACCCCAAGCAAGGAAAAAGAAATAACTACTTTGGAATATAAGATGAAAAACTTGAATGTGGTAGGTCAAAGAGACGCGTCACGGAATTCAATAACCAAGACAAGTTTGGAAAATCCATCAAAAACATCTCATACACATCTCAACAATGAATCATCCAATAACATGGGAATCACCAAAGCAGGAACCAAAAACCAAATGCAAAAGCAAATCATTTATGGGATCAAGTCTGAGGTCTTGTCCGGAGGAAGGAGGCCAGAAGTTCAGTGTCAGGTTTGCAAGAAGGATGGCCATATGTCGAGCCGATGTCCTGATCTTAGGAAACCAACACTAAAGGCCTTGCCACCTCTGAACTCAGGAGTGGTTGACTTGGTTACTAATGTCTGCTCCCGTGCTAAAGATTTGATCGCGTTTTTACCAGAAGAAAGAAAGTTCAGAGAATCAGTATTGTGGAACCTTGAGGAATACATCCAAGAGGTCTTTCCAGATGCCCAGTTGCACCTTTTTGGTTCATCCATGAACGGGTTTGGTTTTAAAGACAGTGACTTGGACATCTGTATGACACTAGAAGGGAAATACAAAGAAGAGGTGGACTGTATCAATGTCATAAACCAACTAGCCAAGAAACTAAAACAGCACAGAGACTGCAGTAACGTTATTGCCATAACCACGGCAAAGGTACCCATCGTGAAGTTCTACCTTCGCAGTGTTAAGCGAGAGGCTGATATCAGTCTATACAACGTACTGGCGCTTGAGAATACTAAATTGCTTGCCACATATGCACAACTGGACGAAAGAGTCGCCATACTGGGATATACTCTCAAGCTATTCGCTAAGGTGTGTGATATCGGCGACGCTTCTAAAGGAAGTCTCTCATCATACGCGTACATACTCATGCTATTACACTTTCTACAAAAACGAGATCCACCTGTCATACCGGTTTTACAGGAACTTTATGCGGGGGATACCCAGCCACGTAACATGATTGAAGGCTGGAACTGCTGGTTTTATAATGACCTACAAAACTTGTCCAAGGTTTGGAAATCCAACATACGAAACACGGAGAGTGTGGGGAGTCTGTGGATAGGTTTTTTGCGGTACTTCACAGAAACATTTGACTGGGAACATGAAGTCGTTTGCTGTAGAAGAAGCAAAAAACTTACAAAGTTCGAGAGGATGTGGACGCGACATATTTTCGCTATCGAAGATCCCTTCAATCTCGATCACAACCTTGGTGCAGGCATCACCCGTAAGATGGGCACATTCATCAGGAATGCTTTAGCTCGTGGTCGAGAAAGATTTGGTTCCACACCTCCAGTCCTCCCCTTCCWCATCTTGATCGATTTCTACTTCCATGTAGATTTCCTGACAGACGGGTGTGAGGCACCCAGTGACCGAACATGTCGTGTTTGCGGCCACATTGGACATATCGCCAGAGAATGTCCCAGGCTCAAGAAAAACCGAAGAGAAGAAAGAGAGAGGCTTCAAGATCGCTCTAATTTGAGCAATCGGCCGTTCGCAATGATGAATGCGAGTCCCCGTAAACGCGCGTCTACAGTTCCYATTCAGATCACAAGAAAGGATACTGTCACAGAAAAAAAAGAGGATCATCTTGCAGAGTCTCTGCCCAGTGACCCTTTTCCCAAAGATGCAATGCGGGCTTCTAAACCCCCAGATGGAATCGAGAAACCAAGTAGTATGCCCACGGGTCTTGACAAAGCTTTCTTGGAGAAACAASAAACAAAGTCAATTGAAGCGGTTGCTTCAATCCAAGGAGATGTTCTTGGAGCCAATACATCCAATGAGCAATCTCAGCATCAAGTTTCTCAACCCTCACGAAGTAACCTTGGACCTAAACCACAGGTTGAAGATCAATTCACTCGCGCTCCTATGGATCCATTGCCACGCTCCTCTCACACAGACACTCAAAACGACTCTGTCACATCACATGCATCAAATATTCCCCAAGATACACCTCGACCAGGATTTGGACCAGTAGGGCCATCAGCATTCACAAATCCTAGTCTTCCTAGTAAAAACGTACCTTACGGTGTTCAGCTTTTACCACCGGAAAAATTTATGAGTCCACCAAAGGGTTCTATTCATACTCATCCAGCAGGCTCACCACATCAACCATTTTTATCACCACAACAACATCTTGGACAACTTTCCGATGAGGCAAGGATATCCAATCAAATCCTTCCTGGGTTCCCTGTGATACCCTTACTGGAAAATCCCTTAAATGCCTGGACTCCTATGCCACATCTTGAACCACACTACCATAGCCCGCCGGCCAGGAACATTCCTGGACAACCACGCGAGAGGCCTAGAAGTGTATCAGAGAGCATGGCCTCTCCAGATGCACATCCTGAGCATCGCATACCACTATCTATAGGGAGTAGCCCTCCCGTACATCCCGAGTATCGTATGCCACTACCTATAGGGAGCAGCCCTTCTGTACCAATGCCCCTTGGTAGTCCGCCGCAGGTCTTTAGGAGCTACAACGACAACCCATTTTGGGGTAATAGGGGATTTCCTACCCAAAACGTTGGTTCACCAASCAGACATCCTTCATCACTACCATCCAACTTTCCTATGCCGCATCCAACTAGGAACGTGGATCAAGCTCATTTCTTGATGCAACAGCAACAGCAGCAGCCGGCACAGAGCCCTCCCCAACCACAACCAATGATGCCCAAGGCGTACGGCGGTAACATGAGTCCCGACGTTTTTTTCAAGATGGTAAAAGAAGCTGAGCAACAAAGTACTCGTCAAGTACAGAATAGCCAAGATGCACGACCGAAGCCAATACCATCGTCTGATGCTGTGTTAAGTCATCCAGTAGCAACTCCAATTTTTAAACCACCCAAGACTGCAGACGAGAAGGAGCTGTTTTCTAAGCTCGACAAGGTTCGAGGTTTATGGACCGGCGCCACACCGGATAATGGGCTTAACTACAAGACACAGACGAACAGTGGAAACGATTACATGAAAACCATGCCAAGCCAAGAAAAAGAGAACAATTTCAAGAAAGAGGTCAAAGGAAGCTCTCATAATGATTTGCAAGAAGCTTACTTTGTACAGGAGAAACAGCCAAGAGAGATTAGAAATGATCACGTGAGCATAGGGTCACGTGAGCAGTTTGATCAAGTGAGCATGGAGCCACGTGAACAGGCTAACACATCCTTGGGAATCACAATGGACGTTTCCGAAAGGACTGTGAATGACATAACCCCAGATTCAAAAGCAACAAACAAACAACCACAGCCTCCAAATCCCACTGAAATAAAAGTCGACCAACCAAGTACGCAGATTCTACCTCAAGATAGAAAAAGTGAGAAGCCATCGGAAGGTACCGCAAGCCCTGTACTCAAGAAGCAGTTGGAGGATGAAGGGAAGAAGAAAAGAAACTCCAAAGACAAGACCAAACAGAAGCAGCAGCAGCAACAGCAGCAGCAAACATCAACTGACACTTCCAAATTATTAAAAAAGAAGCAAGGACTCTTAGGAGACAAACCTGGAGAATCTCTCGCCTCGGGAAAGAAACGCCAAGAAAATCGTCCTAATAAGAATATGGACGCRACTGACAGCTCAAGTTCGACCTCCTTGGGTGCGGGTTCTGAGTCTGAAACCGCGCTGTTTGATTTAAGATCTTACCAGAAGGCGTTTCCCTTGGGAGATCTTGACATGGAGACCAACTCAGACAGAGACGGTGGTGATGGGTCAGTTCCCCAACCAAAGCCACACAAGAAACAAAACAGAAATAAAAGCAATGCCCGAAATGGTCAAGAATCTAGAAACACGGCAAGTGGTTCTCGGGTCGTGGAAGAGTCGTCATCCTCGTCGCGAAGAGGGAATAAGAAAGGTGGGTTCGGAGACAAAGGGGCTTCCTCAGCTGGAGAGCCTGCACCAAAACGGAGGAAATCAAAAGAGGGGCTGCCTAGTGGTATTCGAAGCAGCAAAGAAGAATCTAAGGAAAAAGTAGGGAAGTCAGTGGAGAATGGCAGTACGGTTGAAACAACACAGAAAAAAGAAATAGAAACGCCGTCGAAGAATTCTCGAGGCCCCAGAGAAAACAGGAACAGAAGGAAACAAGCCAAAGGACCTGCCTCAGAGGACAAATCGGAGTCCTTTGAGAAAGTACCTGTGGAAAGCAGTGTTGCGCCAACACCACAAGGTAAAAATGGAGGCACATCAGCTTCAAAAACACCTAATGTTCCCAAAGAAGATAAAACCAGAGGACGAAGAAAGCAAAGCAAGGACTCACCCCCTGCTGGGAAAAGTACACCATCACCATCGCCTGAGAATACAACTGGGACTAGCAGCCAGGTACAAATGACACCAAAAAAAGGAGAAAAGAGTGGAACCCCTTCCACGACAACGCGAGGGACTAAAGAAGAAAATGTTAAAGTTATAGAACAAGGTAGAGGGGTGACTCCTGTTGCGAAGAAGGAGTCGCCTACTAGCCGGAGCGAAGATTCTGGAGAAGACACTAAAGGGGGAAATAGTGGTCCGAAACGTAAGAGTAAAGGGCGTGGTAGGGGTAGGGGACGAGGACGGGGGTACGATACTCAACCTCAGCCAGGGCCAGGAACTGATGCAAAGACTTCGCGGTCTGGAAATGAGAAACACAAAGGATCTCAAGAACCTCGAAAATAA

Protein

XP_031574591.1

MEKEASKEDKDKCTEAEMEKSFVNNQDVKIGSEGTRSGSSQSQPKNDVPNTKQPKVSEAMIKDLEEQNFIKLVSKLKCPEKYGNNQFYCEVCNNLVEKMQDVKNHISGKGHRKNKKTKGPVLIMKRIDQPSPKHIEALETMLESVIQEYGLDPDKDLNVRLQVKDEIQEIVQSHISGSYLTLYGSSLTCFGFKTSDVNLDLTLPEEITVPQGLIKLFDILEKNDLCINVKDEFDLNVPQISFIHKKTGLTCHLSCGSKMVCKTSELLKKYGEINPVVRKLVVGFRFWAQCCCIDKTSDGGLAPYCFALMVIQFLQCTNPPILPRLNVQAEITGDQLKFKTSNTASLGLLWFKLFRYYCVEFEIDENAVSIRVKQPFCRETRRWGRRRFAIEDPYMTGHNVSTVSSDKVFDYIIHCMHTSFVYFGTPQKGIEKEANNRSVSEPISASQQRRSRQDSDEVEVYEEVSDEDSQNGKPGARKISSERKVQESNDDDIFQMDDLEDGEGVAVGGEGGATKTPSKEKEITTLEYKMKNLNVVGQRDASRNSITKTSLENPSKTSHTHLNNESSNNMGITKAGTKNQMQKQIIYGIKSEVLSGGRRPEVQCQVCKKDGHMSSRCPDLRKPTLKALPPLNSGVVDLVTNVCSRAKDLIAFLPEERKFRESVLWNLEEYIQEVFPDAQLHLFGSSMNGFGFKDSDLDICMTLEGKYKEEVDCINVINQLAKKLKQHRDCSNVIAITTAKVPIVKFYLRSVKREADISLYNVLALENTKLLATYAQLDERVAILGYTLKLFAKVCDIGDASKGSLSSYAYILMLLHFLQKRDPPVIPVLQELYAGDTQPRNMIEGWNCWFYNDLQNLSKVWKSNIRNTESVGSLWIGFLRYFTETFDWEHEVVCCRRSKKLTKFERMWTRHIFAIEDPFNLDHNLGAGITRKMGTFIRNALARGRERFGSTPPVLPFXILIDFYFHVDFLTDGCEAPSDRTCRVCGHIGHIARECPRLKKNRREERERLQDRSNLSNRPFAMMNASPRKRASTVPIQITRKDTVTEKKEDHLAESLPSDPFPKDAMRASKPPDGIEKPSSMPTGLDKAFLEKQZTKSIEAVASIQGDVLGANTSNEQSQHQVSQPSRSNLGPKPQVEDQFTRAPMDPLPRSSHTDTQNDSVTSHASNIPQDTPRPGFGPVGPSAFTNPSLPSKNVPYGVQLLPPEKFMSPPKGSIHTHPAGSPHQPFLSPQQHLGQLSDEARISNQILPGFPVIPLLENPLNAWTPMPHLEPHYHSPPARNIPGQPRERPRSVSESMASPDAHPEHRIPLSIGSSPPVHPEYRMPLPIGSSPSVPMPLGSPPQVFRSYNDNPFWGNRGFPTQNVGSPXRHPSSLPSNFPMPHPTRNVDQAHFLMQQQQQQPAQSPPQPQPMMPKAYGGNMSPDVFFKMVKEAEQQSTRQVQNSQDARPKPIPSSDAVLSHPVATPIFKPPKTADEKELFSKLDKVRGLWTGATPDNGLNYKTQTNSGNDYMKTMPSQEKENNFKKEVKGSSHNDLQEAYFVQEKQPREIRNDHVSIGSREQFDQVSMEPREQANTSLGITMDVSERTVNDITPDSKATNKQPQPPNPTEIKVDQPSTQILPQDRKSEKPSEGTASPVLKKQLEDEGKKKRNSKDKTKQKQQQQQQQQTSTDTSKLLKKKQGLLGDKPGESLASGKKRQENRPNKNMDATDSSSSTSLGAGSESETALFDLRSYQKAFPLGDLDMETNSDRDGGDGSVPQPKPHKKQNRNKSNARNGQESRNTASGSRVVEESSSSSRRGNKKGGFGDKGASSAGEPAPKRRKSKEGLPSGIRSSKEESKEKVGKSVENGSTVETTQKKEIETPSKNSRGPRENRNRRKQAKGPASEDKSESFEKVPVESSVAPTPQGKNGGTSASKTPNVPKEDKTRGRRKQSKDSPPAGKSTPSPSPENTTGTSSQVQMTPKKGEKSGTPSTTTRGTKEENVKVIEQGRGVTPVAKKESPTSRSEDSGEDTKGGNSGPKRKSKGRGRGRGRGRGYDTQPQPGPGTDAKTSRSGNEKHKGSQEPRK

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2RX14	Terminal uridylyltransferase 4 OS=Mus musculus OX=10090 GN=Tut4 PE=1 SV=2
Q5TAX3	Terminal uridylyltransferase 4 OS=Homo sapiens OX=9606 GN=TUT4 PE=1 SV=3
Q5VYS8	Terminal uridylyltransferase 7 OS=Homo sapiens OX=9606 GN=TUT7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003775 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19088 all species →	TUTase	TUTase nucleotidyltransferase domain	Domain	Interproscan
PF03828 all species →	PAP_assoc	Cid1 family poly A polymerase	Family	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR045100 all species →	Domain	TUTase nucleotidyltransferase domain	Interproscan
IPR002058 all species →	Domain	PAP/25A-associated	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271 all species →	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan
GO:0050265 all species →	Molecular Function	RNA uridylyltransferase activity	Interproscan
GO:0071076 all species →	Biological Process	RNA 3' uridylation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13291	TUT; terminal uridylyltransferase	EC:2.7.7.52	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_031574591.1 across 18 RNA-seq samples of Actinia tenebrosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

39.2Max TPM

16.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism	5	5	21.24	39.16
Tentacle	4	4	19.48	24.58
Mesentery	3	3	7.46	8.35
Acrorhagi	3	3	18.27	24.52
whole	2	2	8.57	9.29
whole organisim	1	1	25.35	25.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR4696535	whole organism	Whole Organism	not recorded	not recorded	SRP092287	39.16
SRR3210696	whole organism	whole organism	not recorded	not recorded	SRP070917	22.62
SRR3193648	whole organism	whole organism	not recorded	not recorded	SRP070917	19.26
SRR3206038	whole organism	whole organism	not recorded	not recorded	SRP070917	13.70
SRR2437124	whole organism	whole organism	not recorded	not recorded	SRP063756	11.46
SRR4677502	Tentacle	Tentacle	not recorded	not recorded	SRP092287	24.58
SRR4677495	Tentacle	Tentacle	not recorded	not recorded	SRP092287	24.17
SRR4677522	Tentacle	Tentacle	not recorded	not recorded	SRP092287	23.44
SRR6282389	Tentacle	Tentacles	not recorded	not recorded	SRP124815	5.72
SRR4677488	Mesentery	Mesentery	not recorded	not recorded	SRP092287	8.35
SRR4677492	Mesentery	Mesentery	not recorded	not recorded	SRP092287	7.08
SRR4677518	Mesentery	Mesentery	not recorded	not recorded	SRP092287	6.95
SRR4677507	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	24.52
SRR4677515	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	15.83
SRR4677512	Acrorhagi	Acrorhagi	not recorded	not recorded	SRP092287	14.47
SRR3193284	whole	whole	not recorded	not recorded	SRP070917	9.29
SRR3216075	whole	whole	not recorded	not recorded	SRP070917	7.85
SRR3207346	whole organisim	whole organisim	not recorded	not recorded	SRP070917	25.35

Source: CnidoSite RNA-seq expression matrices (ATENE_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.