Genomic Location: NW_022258237.1:80254...100453
NR annotation: XP_031575475.1, ephrin type-B receptor 1-B-like isoform X3 [Actinia tenebrosa]
Species Actinia tenebrosa · all data for this species · gene families
| CDS |
| XP_031575475.1 |
| Protein |
| XP_031575475.1 |
| UniProt accession | Description |
|---|---|
| O42422 | Ephrin type-A receptor 7 OS=Gallus gallus OX=9031 GN=EPHA7 PE=2 SV=1 |
| Q61772 | Ephrin type-A receptor 7 OS=Mus musculus OX=10090 GN=Epha7 PE=1 SV=2 |
| Q15375 | Ephrin type-A receptor 7 OS=Homo sapiens OX=9606 GN=EPHA7 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000240 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00536 all species → | SAM_1 | SAM domain (Sterile alpha motif) | Domain | Interproscan |
| PF00041 all species → | fn3 | Fibronectin type III domain | Domain | Interproscan |
| PF07714 all species → | PK_Tyr_Ser-Thr | Protein tyrosine and serine/threonine kinase | Domain | Interproscan |
| PF01404 all species → | Ephrin_lbd | Ephrin receptor ligand binding domain | Domain | Interproscan |
| PF14575 all species → | EphA2_TM | Ephrin type-A receptor 2 transmembrane domain | Domain | Interproscan |
| PF07699 all species → | Ephrin_rec_like | Tyrosine-protein kinase ephrin type A/B receptor-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001090 all species → | Domain | Ephrin receptor ligand binding domain | Interproscan |
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR011009 all species → | Homologous_superfamily | Protein kinase-like domain superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR017441 all species → | Binding_site | Protein kinase, ATP binding site | Interproscan |
| IPR050449 all species → | Family | Ephrin receptor tyrosine kinases | Interproscan |
| IPR000719 all species → | Domain | Protein kinase domain | Interproscan |
| IPR013761 all species → | Homologous_superfamily | Sterile alpha motif/pointed domain superfamily | Interproscan |
| IPR001660 all species → | Domain | Sterile alpha motif domain | Interproscan |
| IPR020635 all species → | Domain | Tyrosine-protein kinase, catalytic domain | Interproscan |
| IPR008266 all species → | Active_site | Tyrosine-protein kinase, active site | Interproscan |
| IPR001245 all species → | Domain | Serine-threonine/tyrosine-protein kinase, catalytic domain | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR027936 all species → | Domain | Ephrin receptor, transmembrane domain | Interproscan |
| IPR016257 all species → | Family | Ephrin receptor type-A /type-B | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR011641 all species → | Domain | Tyrosine-protein kinase ephrin type A/B receptor-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46877 all species → | EPH RECEPTOR A5 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005005 all species → | Molecular Function | transmembrane-ephrin receptor activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006468 all species → | Biological Process | protein phosphorylation | Interproscan |
| GO:0007411 all species → | Biological Process | axon guidance | Interproscan |
| GO:0030425 all species → | Cellular Component | dendrite | Interproscan |
| GO:0048013 all species → | Biological Process | ephrin receptor signaling pathway | Interproscan |
| GO:0004672 all species → | Molecular Function | protein kinase activity | Interproscan |
| GO:0004713 all species → | Molecular Function | protein tyrosine kinase activity | Interproscan |
| GO:0005003 all species → | Molecular Function | ephrin receptor activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007169 all species → | Biological Process | cell surface receptor protein tyrosine kinase signaling pathway | Interproscan |
XP_031575475.1.Transcript abundance of XP_031575475.1 across 18 RNA-seq samples of Actinia tenebrosa. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism | 5 | 0 | 0.00 | 0.00 | |
| Tentacle | 4 | 0 | 0.00 | 0.00 | |
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Acrorhagi | 3 | 0 | 0.00 | 0.00 | |
| whole | 2 | 0 | 0.00 | 0.00 | |
| whole organisim | 1 | 0 | 0.00 | 0.00 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR2437124 | whole organism | whole organism | not recorded | not recorded | SRP063756 | 0.00 |
| SRR3193648 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3206038 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3210696 | whole organism | whole organism | not recorded | not recorded | SRP070917 | 0.00 |
| SRR4696535 | whole organism | Whole Organism | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677495 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677502 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677522 | Tentacle | Tentacle | not recorded | not recorded | SRP092287 | 0.00 |
| SRR6282389 | Tentacle | Tentacles | not recorded | not recorded | SRP124815 | 0.00 |
| SRR4677488 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677492 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677518 | Mesentery | Mesentery | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677507 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677512 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR4677515 | Acrorhagi | Acrorhagi | not recorded | not recorded | SRP092287 | 0.00 |
| SRR3193284 | whole | whole | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3216075 | whole | whole | not recorded | not recorded | SRP070917 | 0.00 |
| SRR3207346 | whole organisim | whole organisim | not recorded | not recorded | SRP070917 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (ATENE_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Actinia tenebrosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 0 | not in this network | - |
| Negatively correlated | 0 | not in this network | - |
This gene has no edge at all in the Actinia tenebrosa network, in either direction — it is not one of the genes the network was built from (the network covers genes with enough expression variation across the transcriptome samples). The counts above are a property of the network, not a failed lookup.
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Actinia tenebrosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
