Gene detail

Detailed information of XP_032218052.2 in Nematostella vectensis

Genomic Location: NC_064038.1:10902225...10912072
NR annotation: XP_032218052.2, homer protein homolog 2 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032362161.2

ACATTGCCCAACTTCAAGTTAATCATTGACAGAAATCAATATGACTCATGTACACTCAATTGgctttcaaaccaagaagacCCACAACTTTTTTCATAAGGCTGTTGTCCCATTACCGCTTGGTCCTCCTTCGGAATTTTGCGACGAAATGGCGTCTGAGGACAGCATTATTGTGAAACCCGAAGAGCAACCGGTGTTTTCGACGAGAGCTCACGTCTTTCAAATCGACCCCCAGACAAAGAAGAGTTGGATTCCATGCTCAAAGCAAGCTGTCACAGTCTCCTTTTACTATGATCCCATTAATGAAACACACAGGATTATATCCGTCGATGGCTCTAAGGCTATCATCAACAGTACCATATTTCCCAATATGAACTTTACGAAAACATCACAGAAGTTTGGCCAATGGTCTGATCCCAAAGTCAGCAGTGTATTTGGCCTTGGCTTCCCCTCCGAAGCAGAACTGAACAAGttTGCAGAGAAGTTCAAAGAAGCCAGAGGATCCTCAAAATCAATCAGCAGTTCTAGTATTACATCTGGGGGGTCAAACTCACCGAAACCATCACTTCCTAATGCGGTTATCAGTAGTCCACAAATGAACGGCACCAACGGGTCGCCAACACCTCAGTCTGGGAAGAAGACACCTTCCATCCGAAGTGGGTCTTCCACAAGTAGTATTGAGGATGAGAGTAAAGATTCTCCAGCAATTAGTCACAAACCAGTTGGCAATACTGAGGCTCAACTCAAATATGAAAATGACAGACTTAAGATGGCTCTTGCTCAAAGCTCTGGGAACGCTAAGAAGTGGGAGGCAGAGCTTCAGACATTGAAGAATAACAATGCTCGGCTTACTGCCGCTTTACAAGAGAGCACTGCAAACGTAGAGGAGTGGAAGAAACAGCTAAATGCATACAAAGAAGAAAGCAGTAAACTTAGAAAAAAGGTACAAGAGCTAGAATCATCCGATATGAATGCTGATGTTTTCAACAACATGCAGCAGGAGAAGATGGCATTTGAGGGTCGGATTATACACCTTGAAAGCATGGTGTCAGATAAGGACGAGGAAATATCTCAACTTAAAGGAACAAATGCTGATCTGTCAAGTCAGATTAAGgaaagtaaagttaagaatcAAGAATTAGAACAAAGAGTGAAAGACCTAGAAGAACGAATGAGCCAAGCTTCTGTGAATCAGAATGCAAAAGAACAACTAAAATCATTACAGCAAACTCTCTCTCAAAAGCTACAAGAGATGAGTGATCTAAATGAGAAAATATCATCTCTGATAACAAATTAATAACTAATCAATTTTGTATTTGTTGCAAAGTTCTTTtttgaaatttcatttcacTCAATAACAAATCAACCCAAGttgtaaaaataacaaaaaaaaaacgccaaTGCAGTTTTTTTACCAGGCATGTAGCCAGGatttactgggggggggggggggggggggggggggggggggaggggtgacaTCCCTTAATGCCCTGATAGATTCTACAACTATTCCCCACCCCCAACAATGTCAGGTTGATGACAACAAGCTAGATTATTTTtagctgtttctttttttttaaatacagtATTTCTTATGTTTTGTCAATCGAAATTAAACAATGTAAAATATTTGCTATAACCAAAGCTGGGAAATAGGGGGAAATTATTCAGTACCTTTCGGTACTCATGAGTGACAGTTTATGATTGtaattaatatatagattATGACAATTTACTATAGAATTTCATATTATTGCCTGTGTGAAAAGCATATCTTTAATCAAAGTGTACTCTACTTAGTGTGGAATCATGTTAAGGATAATATAGCATGGTttatattttcaatgaaaCTTATTGTAAGCAACGATTCTATAAGAATCAGGACTGTAATTTCAATGATCTAATTTtaaattgttcttttttttctggtttcAGACATGTGCATCAAATGACAGTAGTGTTTGATTTTAGTATTTCCAGCTAGCTACTCCTGCCCAAATATGGCTAAGGAGAATCCTTAAGAGTCTTTAGTTTGACAAAATAATTagttaaaacaaatatttcttGTCATATCTTGGCCATGTCACACAAAATGGCCTAAAGAACATCACAAAAAAGGACAAAATTCATTTCTTTGAATTGATCTTAGACAACAGTAATGTGAAATGGCCCAGATATGGCAAAATGGGTACCTAGTAAGCttttagaaataaaacaatattgaaACAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QWW1	Homer protein homolog 2 OS=Mus musculus OX=10090 GN=Homer2 PE=1 SV=1
Q9NSB8	Homer protein homolog 2 OS=Homo sapiens OX=9606 GN=HOMER2 PE=1 SV=1
O88801	Homer protein homolog 2 OS=Rattus norvegicus OX=10116 GN=Homer2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003713 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00568 all species →	WH1	WH1 domain	Domain	Interproscan
PF08826 all species →	DMPK_coil	DMPK coiled coil domain like	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000697 all species →	Domain	WH1/EVH1 domain	Interproscan
IPR014930 all species →	Domain	Myotonic dystrophy protein kinase, coiled coil	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR045027 all species →	Family	Homer family	Interproscan
IPR044100 all species →	Domain	Homer, EVH1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10918 all species →	HOMER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007216 all species →	Biological Process	G protein-coupled glutamate receptor signaling pathway	Interproscan
GO:0035256 all species →	Molecular Function	G protein-coupled glutamate receptor binding	Interproscan
GO:2001256 all species →	Biological Process	regulation of store-operated calcium entry	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15010	HOMER; homer	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032218052.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

27.3Max TPM

12.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	13.04	14.07
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	11.16	16.06
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	12.69	17.22
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	12.87	13.89
whole 6 week old aboral regenerate · regenerate uncut	3	3	12.13	15.95
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	9.99	20.76
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	9.85	15.37
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	14.23	17.37
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	15.16	18.37
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	14.39	15.29
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	14.80	16.56
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	18.49	27.28
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	14.86	16.26
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	5.42	16.25
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	7.79	11.80
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	4.77	14.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.07
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.21
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.86
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	16.06
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.63
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.80
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	17.22
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	11.24
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.61
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.89
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.55
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.16
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	15.95
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.54
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.90
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	20.76
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.20
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	15.37
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	14.18
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.37
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.30
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.02
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.37
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	14.99
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.12
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.29
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	14.69
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	13.20
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	16.56
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	14.35
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	13.49
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	27.28
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	15.96
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	12.23
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	16.26
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.23
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.08
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	16.25
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	11.80
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	11.58
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	14.30
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.