Gene detail

Detailed information of XP_032218314.2 in Nematostella vectensis

Genomic Location: NC_064035.1:6644904...6664988
NR annotation: XP_032218314.2, uncharacterized protein LOC5517957 isoform X4 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5517957

ATGACAAGCCGCAAAGAGAACTACAAAGATTTAGCTGTTTTTAAGCAGCAACCAAAAAAAGCGGCAGCGGATAGAGTAGATGTGCAAGTTTTAGAGACCATTACTGATCAAGGCATCCTAGATCCAGATGATCTTGTCTGCGATGTTTTGGATGATAGAGACAAGCTGAATGCAGTATATGAAGAGTCTCCCACTACAAAGCAATCCTGTAATGGAGAAGACAGACTTAATGACATTTCTAATTCTGATTTATTTAACAATGAGACAAATACTGTGAGAACCATCAACCAGAACAACAGAGTGTCACCTGAAACTATTAGAGATGAAAATCACAATAATCGTGCATTGCCAAAACTAATAACAAGTGATCCTAAAGTAAAACTAAAACCCAGCCCTCCACCTGTGGCACCTAGACCCCCAAACACAAAGAAAAAGGAGCAACCTGTCTCTGTGTCTACATCAGAAAGCCCTTCAGAGGAAGATTCTGGGATATCTATCGATGTGCGTGCTCGTATGGAATTGGACTCTGTTAACTCTGAGAGCAATGAGGTTATTGCAACTCCAAGAGTTCTACCTACAGGAGAGACTGCATTTGTGGCAATCGGAACTCCAATGAAAAAAAATAAGACTTTCGATTTTAATGAGAACCACCCTGAAGACATGCTCAAAGAATCCTCTTGTGATTTTGAGCACAAGGATGATGATTTGGATGCCTTTACACTAGGAAGGAACTCAGCTCGTCAGAGCATGTTTGTTGATAACCCTGTTCTTGATCGCTGGGCAGAGTTACAAGAGGAGCGTCAAAAAGATCAGCTAAGATCATCTGGGAGATATCAACCTCAGGCCACTGTCAGTTTACCTAGGAAAGAACAATTAAATGATTTTCCATCATATCATCATCAACAGTATCCACATGAGCGAGAGCGCACAAATTCCTACAGTAGTGATGACAGTTCTGATGATGTTATAATGATTGAGCTGCATCCTGACAATGAAGATGACCTTGGCTTTACTGTCAAACCTTACAAAACTGCTGATGGCAGGGAAATAGGGCTAATAGTGCGGGAAATAGCTCCTGGGAAATGTGCATCGAGAAATGGGAAACTACAGGTCGCTGATAGAATACTAGAGGTCAATGGCCAGAATCTAATGGATCTCTCCAATTCAAGAGCTCAAGAGGTGTTTGACTCTGCAATCCGTTCACCAGTTATCAAGCTTGCCGTATCAGCGTCCTCATCATTTGTGTCAGGCAACACAAAGAAACCCACTAAACATGACAAACCTCCCTCTGCCAGTTTTCAACCAGAACCTGTTGTAATAAAAGCTGTTTACAAAGACAAAGAAAAAGCAAGTATGACAAAACCAGAAATTCCTCAAAATTTTGGTCTTCCTAGAAGTCCAGTTAGTCCAGGAATACCCAGAAGCCCAGGTTTTCCCAAGAGTCCAAGAAGTCCTGATGGTATTGAGCCACCACCTGGATTCAGAGATAACAGCCAGGCAGGCGCACCTCCACCAATGTTAAGCAGCAAGGTGGTTAGCAAGAGGATGTTGCTAGAGCTGAATAAAGGTGGTGATGGTTTAGGGTTCAGTATAACAACCAGAGATAATCCTGCTGGCGGCCACACCCCCATATTTGTCAAGAGTATTCTTGCTAAAGGTGCAGCCATCGAGGATGGTCGGTTAAGAGGTGGTGACCAGATTATCGAGGTGAATGGGATGCCAATGACAGGCAAGAATCAGGGGGAGGCAGTGAACATCTTGCGGAGTACAGAGGGCGTGGTAAAGCTTCTGATTCAGCGAGAGGAGCTGGTGCAATCACCCACCAAGCCTGCCATTGAGCTTAACGAGGACAGCACCCGTTATCTGCGAGAGCAAGGGAAACAGGTGCTCACCTTCAAGATTCCACTTAACATGTCCGGTGCAGCAGGCCTAGGCGTTAGCGTCAAGGGCAAGGTTTCGGACACTGACAGTGGAAGGGACAGCCCTATAGACATGGGCATCTTCGTCAAGTCTGTTATCGCAGGTGGAGCCGCTTTTAAGGACGGTCGGCTCAAAGCCGAAGACCAGCTTTTGAGCGTGAACAATGTTTCCTTCATGGGGTTGACCAACACAGAGGCGATAGATGGCTTACGTCGCGCCATGCAGAACACAAGACTCGGACAGGCCTTCATAGAAACAACTGTAGCGAGAGAACGCGACCCGCAGAACGATATCGGGACGGTGGTGAGGTCCCACGAGGTGCTAAAAGCCCCGCCCCAAGAGAGGTCCATTGAGGGTGGAGACCACACCCCTACACGTGTCGAGCCTCCTACATTAATGCAGCCGCCTGTGATAGAGCATCGACCAGCAGACAAACAAGCTGAATACCTGGAAGATGATGAAATAGATGGATTCGAATCGGGCGCACTATTAAACTTGACGCCCGCAAGATCCAGGAACCCTGTCCAGCGGAATGAATCTTACTGCAATGCCGTCAGTCGGAGTCCTGGGTACTATAGCCCCCTTCGGGATAAACCTGCCCGTTCCAGTCCCCTAGCATTCAGGGAGCAGCCTTCCTCAGCGTCTACACCAAGTGGCGCTCGACCACCTCGTGACACAGACAGACCGTTCACCACCGTAGCCATGCCGACGCCCCCGCTAGAGAATACAGGAGAGGGGCGTAGTCCGCTCCCGCCGCCGAGGAACGACTCGTTCAGACACACGGTCGTAACCAACCACAAGATCAAGCAGCACTTTAATGAAAAGGGTACCATGCCACCGCCCGCCCCGCTTGCCAATAGACCAGAAGGGTCCAATAGACCAGAAGGGTCCAATGGGTCCACTAGAGACACTCTACCTTCTTATGACCAGGCTCTGGAGAGACTGCGCAATTCTCCCGCCGTGACCGAAGGCGCGCCCCAACGATTCTCTTGGTCGCAGGAAGACAACAAGGAGCGATCGCGCAACTCCTCTAGCACTGGCGAAAGTTCGCCAAAGCGCTTTTCGTGGTCGCAGGAAGATAGCAGGGTGCAAATGCGCAATTCTCCCGCCGTGACCGATGGCGCGCCGAACCGCTTCTCTTGGTCGCAGGAAAACAACAAAGAGAGATCGCGCAACTCCTCAAGCACGAGCGAAAGTTCGCCGAAGCGCTTCTCTTGGTCGCAGGAAAATAGCAAGGACGTTGTGTTTGCAGGCCCAGATCTGCCAGCGGATAACCCTTTCAACAGAGAAGGGTTTGGTCGCCAGTCAATGTCGGAAAAAAGAGGTCGAGCGGCCGTTGACGCAAAGAAAACTGAAGTGTTCCAGAAAAGAGAGAAGCAGCGGAGGACGAGCGTGCCTGGTGACGAGTCTGTCTTTGATGGCAAACCTGCACCTCTGAAGAAAGCCCACTCTGAAGGGCAGATGAAAGTCAACACTCTTCCAGTTAATGGGTCTAGTTTACCGCGGCTGGCTCCCGACAATAGACCGATGTGGAAGTCTAGTTCGGAGGGAAGGATACGCAACGGCCCGAATCAAAATGCTAACAGTACAGGTGATGTATCTGGTAGTAATCCACGAATCAGCCAATCAGAGGACGCACAGGAAGAAATCCCTATCACCATGACGAGCAAGGCGGACTTCAACGACGTTCAGCAAAAACTCGCTAACAAGAAACCATTTTATAGGAAATTCAAGCTTGGTAAGAACAAGCGAGGTGACTACAACTTATCAGACTCCGAAGGATCCCCGAAGCACTCGGGTTACAGCCAGGAAGCACTCATTGATTTCCCCGCTGAGCAGAGGTACCGTCAACTCGTCAACCACTACGGCCAAGAGGACTGGGACCAACGATCTAGATCCAGTCGGCAGAGTACAGATAACGAGAGTATGCACTCTAGCTCTTCTGCTGGCTTAAAAATAGGGAGAGTGATCGTATCACAGCCTACACGCGTGTAA

Transcript

rna-XM_032362423.2

CACAATTCTCTCTAGCTCATTATGGGATCCGACCATATCAGTTCGAATTCCTACTACTAGAACAACAACAGTACTAAACGGCGAGCAAAATCACCTTTCAACTCTACTCAGTTTAGATAAGCGCTCATATAGAGGTCAGAAACAAAAGCGAAAAGTCCTCACAATTACATTCGCGCGAAGTGATAAGAGAGTTTTTATTGAATATGGATAATTTTCAATTGaatgttttcaaataattgTGCATGTCGCaaatgaataagcgcctttCAGAGAGGACATGACAAGCCGCAAAGAGAACTACAAAGATTTAGCTGTTTTTAAGCAGCAACCAAAAAAAGCGGCAGCGGATAGAGTAGATGTGCAAGTTTTAGAGACCATTACTGATCAAGGCATCCTAGATCCAGATGATCTTGTCTGCGATGTTTTGGATGATAGAGACAAGctGAATGCAGTATATGAAGAGTCTCCCACTACAAAGCAATCCTGTAATGGAGAAGACAGACTTAATGACATTTCTAATTCTGATTTATTTAACAATGAGACAAATACTGTGAGAACCATCAACCAGAACAACAGAGTGTCACCTGAAACTATTAGAGATGAAAATCACAATAATCGTGCATTGCCAAAACTAATAACAAGTGATCCTAAAGTAAAACTAAAACCCAGCCCTCCACCTGTGGCACCTAGACCCccaaacacaaagaaaaaggAGCAACCTGTCTCTGTGTCTACATCAGAAAGCCCTTCAGAGGAAGATTCTGGGATATCTATCGATGTGCGTGCTCGTATGGAATTGGACTCTGTTAACTCTGAGAGCAATGAGGTTATTGCAACTCCAAGAGTTCTACCTACAGGAGAGACTGCATTTGTGGCAATCGGAActccaatgaaaaaaaataagacttTCGATTTTAATGAGAACCACCCTGAAGACATGCTCAAAGAATCCTCTTGTGATTTTGAGCACAAGGATGATGATTTGGATGCCTTTACACTAGGAAGGAACTCAGCTCGTCAGAGCATGTTTGTTGATAACCCTGTTCTTGATCGCTGGGCAGAGTTACAAGAGGAGCGTCAAAAAGATCAGCTAAGATCATCTGGGAGATATCAACCTCAGGCCACTGTCAGTTTACCTAGGAAAGAACAATTAAATGATTTTccatcatatcatcatcaacagtaTCCACATGAGCGAGAGCGCACAAATTCCTACAGTAGTGATGACAGTTCTGATGATGTTATAATGATTGAGCTGCATCCTGACAATGAAGATGACCTTGGCTTTACTGTCAAACCTTACAAAACTGCTGATGGCAGGGAAATAGGGCTAATAGTGCGGGAAATAGCTCCTGGGAAATGTGCATCGAGAAATGGGAAACTACAGGTCGCTGATAGAATACTAGAGGTCAATGGCCAGAATCTAATGGATCTCTCCAATTCAAGAGCTCAAGAGGTGTTTGACTCTGCAATCCGTTCACCAGTTATCAAGCTTGCCGTATCAGCGTCCTCATCATTTGTGTCAGGCAACACAAAGAAACCCACTAAACATGACAAACCTCCCTCTGCCAGTTTTCAACCAGAACCTGTTGTAATAAAAGCTGTTtacaaagacaaagaaaaagcaAGTATGACAAAACCAGAAATTCCTCAAAATTTTGGTCTTCCTAGAAGTCCAGTTAGTCCAGGAATACCCAGAAGCCCAGGTTTTCCCAAGAGTCCAAGAAGTCCTGATGGTATTGAGCCACCACCTGGATTCAGAGATAACAGCCAGGCAGGCGCACCTCCACCAATGTTAAGCAGCAAGGTGGTTAGCAAGAGGATGTTGCTAGAGCTGAATAAAGGTGGTGATGGTTTAGGGTTCAGTATAACAACCAGAGATAATCCTGCTGGCGGCCACACCCCCATATTTGTCAAGAGTATTCTTGCTAAAGGTGCAGCCATCGAGGATGGTCGGTTAAGAGGTGGTGACCAGATTATCGAGGTGAATGGGATGCCAATGACAGGCAAGAATCAGGGGGAGGCAGTGAACATCTTGCGGAGTACAGAGGGCGTGGTAAAGCTTCTGATTCAGCGAGAGGAGCTGGTGCAATCACCCACCAAGCCTGCCATTGAGctTAACGAGGACAGCACCCGTTATCTGCGAGAGCAAGGGAAACAGGTGCTCACCTTCAAGATTCCACTTAACATGTCCGGTGCAGCAGGCCTAGGCGTTAGCGTCAAGGGCAAGGTTTCGGACACTGACAGTGGAAGGGACAGCCCTATAGACATGGGCATCTTCGTCAAGTCTGTTATCGCAGGTGGAGCCGCTTTTAAGGACGGTCGGCTCAAAGCCGAAGACCAGCTTTTGAGCGTGAACAATGTTTCCTTCATGGGGTTGACCAACACAGAGGCGATAGATGGCTTACGTCGCGCCATGCAGAACACAAGACTCGGACAGGCCTTCATAGAAACAACTGTAGCGAGAGAACGCGACCCGCAGAACGATATCGGGACGGTGGTGAGGTCCCACGAGGTGCTAAAAGCCCCGCCCCAAGAGAGGTCCATTGAGGGTGGAGACCACACCCCTACACGTGTCGAGCCTCCTACATTAATGCAGCCGCCTGTGATAGAGCATCGACCAGCAGACAAACAAGCTGAATACCTGGAAGATGATGAAATAGATGGATTCGAATCGGGCGCACTATTAAACTTGACGCCCGCAAGATCCAGGAACCCTGTCCAGCGGAATGAATCTTACTGCAATGCCGTCAGTCGGAGTCCTGGGTACTATAGCCCCCTTCGGGATAAACCTGCCCGTTCCAGTCCCCTAGCATTCAGGGAGCAGCCTTCCTCAGCGTCTACACCAAGTGGCGCTCGACCACCTCGTGACACAGACAGACCGTTCACCACCGTAGCCATGCCGACGCCCCCGCTAGAGAATACAGGAGAGGGGCGTAGTCCGCTCCCGCCGCCGAGGAACGACTCGTTCAGACACACGGTCGTAACCAACCACAAGATCAAGCAGCACTTTAATGAAAAGGGTACCATGCCACCGCCCGCCCCGCTTGCCAATAGACCAGAAGGGTCCAATAGACCAGAAGGGTCCAATGGGTCCACTAGAGACACTCTACCTTCTTATGACCAGGCTCTGGAGAGACTGCGCAATTCTCCCGCCGTGACCGAAGGCGCGCCCCAACGATTCTCTTGGTCGCAGGAAGACAACAAGGAGCGATCGCGCAACTCCTCTAGCACTGGCGAAAGTTCGCCAAAGCGCTTTTCGTGGTCGCAGGAAGATAGCAGGGTGCAAATGCGCAATTCTCCCGCCGTGACCGATGGCGCGCCGAACCGCTTCTCTTGGTCGCAGGAAAACAACAAAGAGAGATCGCGCAACTCCTCAAGCACGAGCGAAAGTTCGCCGAAGCGCTTCTCTTGGTCGCAGGAAAATAGCAAGGACGTTGTGTTTGCAGGCCCAGATCTGCCAGCGGATAACCCTTTCAACAGAGAAGGGTTTGGTCGCCAGTCAATGTCGGAAAAAAGAGGTCGAGCGGCCGTTGACGCAAAGAAAACTGAAGTGTTCCAGAAAAGAGAGAAGCAGCGGAGGACGAGCGTGCCTGGTGACGAGTCTGTCTTTGATGGCAAACCTGCACCTCTGAAGAAAGCCCACTCTGAAGGGCAGATGAAAGTCAACACTCTTCCAGTTAATGGGTCTAGTTTACCGCGGCTGGCTCCCGACAATAGACCGATGTGGAAGTCTAGTTCGGAGGGAAGGATACGCAACGGCCCGAATCAAAATGCTAACAGTACAGGTGATGTATCTGGTAGTAATCCACgaatcagccaatcagaggacGCACAGGAAGAAATCCCTATCACCATGACGAGCAAGGCGGACTTCAACGACGTTCAGCAAAAACTCGCTAACAAGAAACCATTTTATAGGAAATTCAAGCTTGGTAAGAACAAGCGAGGTGACTACAACTTATCAGACTCCGAAGGATCCCCGAAGCACTCGGGTTACAGCCAGGAAGCACTCATTGATTTCCCCGCTGAGCAGAGGTACCGTCAACTCGTCAACCACTACGGCCAAGAGGACTGGGACCAACGATCTAGATCCAGTCGGCAGAGTACAGATAACGAGAGTATGCACTCTAGCTCTTCTGCTGGCTTAAAAATAGGGAGAGTGATCGTATCACAGCCTACACGCGTGTAACGCCGTCAGAAAGCGCGCTGGAAAATAAGAATGAATGAAGCTTCAGCCTAACACAGGAAGACCGTTACTTCTTCTGACCCATGAAGACCGGGACTCAACCTGACACAGGAAGACCGGTAGTCAACCTGACACAGGTAGACCGGTAGTCAATCTGACACAGGATAACCAGTATTCAACCTGACACAGAAAAACTGGTACTTAACCTAACACAGAAAGACTGGTACTTAACCTAACACAAAAAGACCAGTACTCAACCGAACAAAGGAAGACCGGTAGTCAACCTGATACAGGAAGACTGGTACTCCACCTGACACAGGAAGACCGGTACTCAACCTTACCCAGGAAGACCAGTACTAAACCTGACACAGGAAGACCGGTACTCTACCTGAACCAGGAAGACCGGTACCCAACCTGACCCAGGAAGACAGGTACCCAACCTGACCCAGGAAGTCCAGTACTCAACCTAACAAAGGAAGACCGGTACTCCACCTGACCCAGGAAGACCGGTAGTCAACCTTACAAAGGAAAACCGGTAGTCAATCTGATACAGGAAGACCGGTACCCAACCTGACCCAGGAAGACCGGTACCCAACCTGACCCAGGAAGACCGGTACTCAACCTGACCCAGGAAGACCGGTACTCAACCTGACACAGGAAGACCGTTACTCAACCTAACACAGGAAGACCAGTAGTCAACCAAAACGACATTAACGCAGAACACATAAATACAAGCAATCGTTGaagattttgttttattcaaaAGCATTAAAAACGGTTAGACCACAATATAACTAATAGTTGTGGCAAATGACTCACACTGTTGTGTGTAAAAGCAACCATATTCGTGTAATTATCTCCGATGTATAAATTATGTTAGAAGCGTTGTATACCAACAGACTCGTGTATGGGTCGGCTCTAGATCACAAACACCCTATATATAACCCTAACACTATTTCTGTGTTCGGTGGTTGCTATATAGTATTCGGCTCTAGATCACAAACACCCTATATATAACCCTAACACTATTTCTGTGTTCGGTGATTGCTATATAGTATTAGGCTCTAGATCACAAACACCCTATATATAACCCTAACACTATTTCTGTGTTCGGTGGTTGCTATATAGTATTTCCTTCGTGTTTGAGCCCCAAGCAGCAGCCCAAGGCCTCTCAATACTCATACTGCATTTTTCATGAATACCTTGTcgtaaatattatttttaatcaacaCAAAAAGGAAACGATTATCgaatttataataaaattcttgaaaaattaaaatatgttaAACAGCAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99NH2	Partitioning defective 3 homolog OS=Mus musculus OX=10090 GN=Pard3 PE=1 SV=2
Q9Z340	Partitioning defective 3 homolog OS=Rattus norvegicus OX=10116 GN=Pard3 PE=1 SV=1
Q8TEW0	Partitioning defective 3 homolog OS=Homo sapiens OX=9606 GN=PARD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002915 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12053 all species →	Par3_HAL_N_term	N-terminal of Par3 and HAL proteins	Family	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021922 all species →	Domain	Par3/HAL, N-terminal	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR052213 all species →	Family	Partitioning defective 3 homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16484 all species →	PARTITIONING DEFECTIVE 3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0030010 all species →	Biological Process	establishment of cell polarity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0051660 all species →	Biological Process	establishment of centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04237	PARD3; partitioning defective protein 3	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032218314.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

25.2Max TPM

15.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	16.82	20.82
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	14.34	20.50
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	17.49	21.63
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	18.51	21.98
whole 6 week old aboral regenerate · regenerate uncut	3	3	15.04	17.20
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	10.59	16.51
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	19.25	21.33
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	13.61	15.20
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	16.95	19.22
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	14.54	17.98
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	15.75	17.51
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	19.06	25.17
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	14.64	15.89
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	17.31	19.81
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	13.53	16.84
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	6.32	18.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	20.82
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.42
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.24
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	20.50
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	13.39
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.12
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	21.63
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	16.29
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	14.55
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	21.98
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.38
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	16.17
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	17.20
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.03
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.87
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.51
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	15.25
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	21.33
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	20.73
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	15.67
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.20
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.15
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.47
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	19.22
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.99
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.63
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.98
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.55
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.10
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.51
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	16.65
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	13.10
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	25.17
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.63
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	15.38
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	15.89
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.27
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.75
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	19.81
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.54
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.57
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	16.84
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.87
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.88
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	18.96
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.