Gene detail

Detailed information of XP_032218375.1 in Nematostella vectensis

Genomic Location: NC_064035.1:6774523...6781757
NR annotation: XP_032218375.1, F-box/LRR-repeat protein 4 isoform X3 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032362484.2

GCTGCGCGCGCAGATGGTTATGATCTACCGTTCGGACGTCGGACGCCATATCACTGGTTGATGGCAGAGTCCGACCACCAGCCCATCAGGCCCGTCCGGCAGGTCGGACAAGAGGTCACCATGTTTTCAAGTCAGTACGGTATGGGAAGAAATTACTCGGCGAGTAACCTGGCCGGCGCGGGCTACAGTTATCCTGCTTACGGTGATTTCGTCCAAGCATTTGTTTTACGAACATATGGTCGTTGGTGGAAGATTGCTCCGTCATGTCCGTGCAAGCTAAAATGCAAAACTCGTACTCCCACAGATTTCATAAGTCAGGATTTTGCTGACATAGCATATGAAGTTCCCGTCTACCCCAAAGTAATCAACATCTTAGAGACTTACAATCCTGGTGCAGTTGTACGGATACTGGCCTTGCAGACAGACACCAACATGGTACATACTAAAAGGAGATGGGTGACACTATGGTCAGGGCCCCCACAATGCCCTCCTCCTGTTGCAAGAATGTTCTCTCCTCAGATCAGACGCTGTGACAAGCCAACCAGTCTTATCCGACTGGAATTCAACCAAGACCATTTAGACTACTACACTGAGCTGGATGCTGTTGAGTTAATGGGAAATCTTCCAGTGGCAAATTATGTTCCATCTCCCCAGCCAGCTAACACAATGTCACCTGCGACATCAGCTGTAGTCAGCACTACCAAGCTGTTCAAGCAACTCTCCATCAGTGACAAATCACAGCATGATGACCCTAACAGACACCCAGCAGGGGACAATGGCTTTTTTGATATTCTGCCAaGTGAAGTTTGCCATTTTATCTTTACATATCTTGAGTTGACAGATTTGATAAAAGCAGCTTGCACTTGCAAGTTATTTTTTCTACACTGCTATGATCCAGTGTGGTTTAAAGAGTTGGATTTACAACCCTATTGGACTTTGATAAGTGACACTGCACTTGCAGGGATTCAGTCGAGATGTACTGGAACAGAGAAGCTGAGCCTTGCATGGGCAGGGCCCTATGGTGCAGTAACTGCTGCTGGATTTGAAAATTTTCTTTTGTCTTCATGTGGACAGCTGATTTGTCTGCGCCTCAGTAGTTGTTCATTTGTAACAAGTCATGCAGTCTACACTATATCAAGGACATGCCCTAGTCTTCAAGaGCTTGACATCTCATCGTGTAAGGCAATAGGGGAAAAGGGATTTCTTGAGCTTCAAATGCTAAAGAAACTGGAAAGACTGAACTTGTATCAAACTGCTATAACAGACACCATCCTTGTTTCTGCTTTATGttcCTGGCCGACCTTGAAGCATCTAAATCTTGGAGGGTGTGCAGATATCACTCAGTGTGATGACATCACACAGACACTAGCGCTACATTGCAGaaGTCTTTTGTCACTGGATCTTTGGCGGCAGAAGTCGCTGACCTCTGATGGAGTCTTTAATTTAGCAAATGGGTGCACTCAGCTACAAGAGCTGGAGATTGGGTGGTGCACTAATGTGGTTTCCTCCAGTGGTTGCATACAAGAACTCACAAGAAAATGTCCGAAATTGAAGAAGCTTTTCATGGCTGCTATTCGctctgtgagtgatgatgatgtcaacGAAATTGCAGAAAACTGCAAGGAACTTGAGCAACTTGATATTCTTGGAACTGCATTAGTTACTATGGTAACAATTAAAAGAGTGGTACAAAATTGCTGCAAGCTTAAATTTGCTGATCTGTCCTTTTGTAATAAACTGAGTAATGAATTTGTGAAGCAATTGAGGCAGGATCACCCCAACATTGCATTCAAGAAGAGTTTTGTTAGTTCCGATGGCCAATGAATGAAAAAGTTAAATACTTGGAATAAGAATCACACTTTTCTAgaattttttaattaaaaaaaattatctgtaCAGTTCACATCATATCCATGCACCTCCTATCACGGATAATAAAGAGATTTTATTGGCATAATTTCTTTGATTGACCAATCTAGTGAGATGGCCCTTTAAAACATTAAAAGCTGAAAAGTA

Protein

Uniprot

Uniprot term	Description
Q0VD31	F-box/LRR-repeat protein 4 OS=Bos taurus OX=9913 GN=FBXL4 PE=2 SV=1
Q9UKA2	F-box/LRR-repeat protein 4 OS=Homo sapiens OX=9606 GN=FBXL4 PE=1 SV=2
Q8BH70	F-box/LRR-repeat protein 4 OS=Mus musculus OX=10090 GN=Fbxl4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10270	FBXL4; F-box and leucine-rich repeat protein 4	-	Mitochondrial biogenesis	ko03029	deepkoala