Gene detail

Detailed information of XP_032218573.2 in Nematostella vectensis

Genomic Location: NC_064042.1:7214787...7221454
NR annotation: XP_032218573.2, cell surface A33 antigen [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032362682.2

TTTTTGAATAATAATTAGCCGCATAACTTCCGTCCGTCATGTCATACAGAAGTTATGACGAATAAGACATTGTGACTAATTGAACAATTCGGTTAAGTTTTTATCTTACAAGCAGGGTCAACATGTTAGCAACACATCGATGGATCTTTTATCTACTTTTATCTAAATACTCCCTTTCAACAGATGGGTTCCAGTGGTCAGATGCCCAACAGTCAAGTCATGTGACCAGTACAAGCCTTGGCTTGCAAGCTTCACTCCCATGTGATTATATGCTGACATCATCAGAGCGTGTGAGCATGCGCACCTTCCATGTTATGGCTTGGAGTAAGGAGGATCCCAAGGGAAGTGGGAACTGGACTGGTGTAGCCATCAAGTCGAGCTTACAGCCTGAACCCCAGATCATCTACCAGCGAGGTCAAATACAGATGGAAAATAACACGCTTATTATATCTCAAGTATCACTTGATGATGACTCTAATTACAAGTGCGAAATTAGCAGTAGCTTTTACACCACACCATTTGTGGCACAGCTCAATGTGCTATTTGCTCCGATGGATGCTCAAATCTCGACCGAAGCCGTTGCCATACCGCATGGAGAGAGCCTTAAGATGGAATGCAAAGCACGTGCAAACCCCGCACCAAGCTACGCATTCTTCCTGAATGACAATCTTCTACAGAACACATCATCTGGTCAGCTCGTTATCAAGACTGCATCATCCCGCTTTCACGGGGGAACATACTCTTGTGTGCCCACAAACATTCTAGGAAGGGGGTCAGCAGCTACTGTGACTATTTCAGTGCTGGCTCCCCGCCCAAGTGAGCCCAGCTCCCCCCTGAGTATAGAGTACATCGCCGCAGCAGCAGCAATTGGTGGAGCGCtgttaatcatcatcatcatcctcatcaccatcatatgcCACAACAAAAAGCCAACAGAAGAAAGTGCAGAGACCAAATGCCGTATGAGGACCAACAAGCCAGTAGTCATGCAAGTGGATGCCGCTGAGTCTTATGTCGGCCCTGGAATGTATAGCAGCCAATCACTTGAAGTCGTGAACGACAGCCAGTACATCACTGGCAGATGCAGGTTATCTAGCACCCTCAGCCTGCAGAATTGCGACCTCGGCACACCACGTGTCACCCAGTTATGACGTTCTTATACCCTCCTGACACATAAATGACGTCACCTTGTCTTCGTGTTAAATTCATAACGTTACCATGACGTCACTATGACCTCGAAACACACAGAGATCACATTGAGTTGAAAACATGTCATGGCGCAACGAGCGTGTTGAACACGTGTTTTATTCCATATGATGTCACTGTTTCATATATGACGTCACTATGCCTTGACAATGGTATAGCGCCAACATGGCCCAGAACGCACAATGACGTCACCATGCCCTGCAAAGACAGATATGACGTCACTATGCCCTCGAAACACagatatgacgtcacaatgcCTACCAAACAGATATGACGTCACCATAATCTTTGAAACAGATATTCCCTCCAAACACAGATGTGACGTCACGGGATTCAAACATTTTAATGGCGACACGAACGTGTTGATTCAAAATTacagaattcttttttttaataatttttttgttaagaCGTTTGACATTTTTAAAGACGCCACAATGTTCTATTTGCACGCAGCTCTCACAGCTTCGCAATTAGACCAGAAGTCACAAactattttgttttacttttcaaAGCAAAGCTAAAAAAGGAGAGAGGAGTTTTCGAGAGAGTGCATACATGAGCGTCCATGGGTTGGTGTAGGTGGGAGGACCGGTTGCATCTACTTCGGCCACTTAAAGTCGCAAAATCATTATAATGATATATTTTCTTTAGTATTATATCATTCACAACGCCTCCCTCGCTCTATggaagggagagggggaaCTATTCTCTAGGCAAGGAAGTGAAAGCaagaatataaatattttttacaatATGTGTAGACAGGGTTTTTTTAAttactaccaccattatttATAGTTTGTACATAAAAATGGCGAAATAAAAATTTTACGCTTTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003695 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR051427 all species →	Family	Nectin and Nectin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23277 all species →	NECTIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007157 all species →	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032218573.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032218573.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

23.4Max TPM

9.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	3.34	10.03
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	6.09	8.14
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	10.11	13.81
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	19.41	23.41
whole 6 week old aboral regenerate · regenerate uncut	3	3	9.40	12.20
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	11.16	17.35
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	5.27	8.22
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	13.45	16.35
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	10.90	18.65
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	18.81	20.43
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	18.38	21.60
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	5.99	9.65
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	5.98	9.64
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	4.45	13.36
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	7.00	12.06
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	7.02	21.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.03
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.14
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.15
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.99
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.81
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.41
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.10
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	23.41
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	18.15
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	16.66
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.20
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.18
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.83
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	17.35
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.13
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.22
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.58
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	16.35
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.69
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	10.31
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.65
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	14.06
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	20.43
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	18.85
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.16
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	21.60
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.26
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	16.28
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.65
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.31
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.64
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.29
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.36
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.06
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.94
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	21.06
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.