Genomic Location: NC_064038.1:9055063...9064525
NR annotation: XP_032218673.2, tRNA:m(4)X modification enzyme TRM13 homolog isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5518166 |
| Transcript |
| rna-XM_032362782.2 |
| Protein |
| XP_032218673.2 |
| UniProt accession | Description |
|---|---|
| Q8BYH3 | tRNA:m(4)X modification enzyme TRM13 homolog OS=Mus musculus OX=10090 GN=Trmt13 PE=2 SV=1 |
| Q9NUP7 | tRNA:m(4)X modification enzyme TRM13 homolog OS=Homo sapiens OX=9606 GN=TRMT13 PE=1 SV=2 |
| A7TSF4 | tRNA:m(4)X modification enzyme TRM13 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=TRM13 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004197 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05253 all species → | zf-U11-48K | U11-48K-like CHHC zinc finger | Domain | Interproscan |
| PF11722 all species → | zf-TRM13_CCCH | CCCH zinc finger in TRM13 protein | Domain | Interproscan |
| PF05206 all species → | TRM13 | Methyltransferase TRM13 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022776 all species → | Domain | TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain | Interproscan |
| IPR021721 all species → | Domain | Zinc finger, CCCH-type, TRM13 | Interproscan |
| IPR007871 all species → | Domain | Methyltransferase TRM13 | Interproscan |
| IPR039044 all species → | Family | tRNA:m(4)X modification enzyme Trm13 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12998 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0008033 all species → | Biological Process | tRNA processing | Interproscan |
| GO:0008175 all species → | Molecular Function | tRNA methyltransferase activity | Interproscan |
| GO:0030488 all species → | Biological Process | tRNA methylation | Interproscan |
| GO:0106050 all species → | Molecular Function | tRNA 2'-O-methyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15446 | TRM13, CCDC76; tRNA:m4X modification enzyme | EC:2.1.1.225 | Transfer RNA biogenesis | ko03016 | deepkoala |
Transcript abundance of XP_032218673.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
