Genomic Location: NC_064042.1:7526084...7533200
NR annotation: XP_032218682.2, mediator of RNA polymerase II transcription subunit 4 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5518155 |
| Transcript |
| rna-XM_032362791.2 |
| Protein |
| XP_032218682.2 |
| UniProt accession | Description |
|---|---|
| Q561Q8 | Mediator of RNA polymerase II transcription subunit 4 OS=Rattus norvegicus OX=10116 GN=Med4 PE=2 SV=1 |
| Q7QH62 | Mediator of RNA polymerase II transcription subunit 4 OS=Anopheles gambiae OX=7165 GN=MED4 PE=3 SV=3 |
| Q177A7 | Mediator of RNA polymerase II transcription subunit 4 OS=Aedes aegypti OX=7159 GN=MED4 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006133 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10018 all species → | Med4 | Vitamin-D-receptor interacting Mediator subunit 4 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019258 all species → | Family | Mediator complex, subunit Med4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13208 all species → | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003712 all species → | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016592 all species → | Cellular Component | mediator complex | Interproscan |
| GO:0070847 all species → | Cellular Component | core mediator complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15146 | MED4; mediator of RNA polymerase II transcription subunit 4 | - | Transcription machinery | ko03021 | deepkoala |
Transcript abundance of XP_032218682.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
