Gene detail

Detailed information of XP_032219059.2 in Nematostella vectensis

Genomic Location: NC_064044.1:8442716...8447813
NR annotation: XP_032219059.2, zinc finger protein 346 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032363168.2

gataaacaTAACAAATATAATATAGAATTGTGGTTAAATATTCATTTAACACCCCGCTTCGGATTTTCTCTTTCAGTTCGAACAaaaataggcattatttggtCAGCGGACTTTTAGAGTTCGCGCGTTGCCCATGCGCGTGACCAATTTGTTGACCTAGAAGTCTTGGACTTGTCTTTTGTAGAGATGGATGCAACTCCAGAAGTTTCCCCCCAAAAAACGGACACTTCCCCAACTTCTCAATCCGAAAATCCTACAAAACCAATAGAACAATCTCCCGAACCTGCTGTTCAAGTCAAAAAGGGAACCAAGCGAAAAGCCCCCTCCGATAACAAGCTATACATTTGCGAAATTTGTCATGTCGAGTTAAACTCTGCGAGTCAGGCGTTTCAACATTTCCAAGGGAAAGCACATCTTGGGAAAGTACGAGTTCTTGAACAAGTTTCGGAGGTGACCCAACCCCCTAAACCAGCCAAGCCTTTCACCCCTCATCTCAAACCTCCAAAACCCAAACCTGGCTCCCATTTAGACCCAGACACGCACTGTCCCCTGTGCAAGAAATGGTTCAACTCCAGAGTACAGGCAGACTCTCACTACAGCGGGAAGGCCCACCTCACACAGGTGGACCTATACAACATGCAGCCAAAATTTAAGAAAACAAAGGAAGAGGAAGAGTTTGATAAATTGCTTGAAGAAGCCGATGCCATGACTCACCAAGAAgtcaaaaatgtgaaaaacatCAAACTGGGCAAGAATGTTAAAACACAGCTGTACACATGTGAACCATGTAATATCACATTGAACTCTCAAAAGCAGATGTCGCAGCACTTACTTGGACTGAGACATAAAATTGTTGTGGGGAAAGCCCagcctcccccaccccctaccccaGGGGAGTCAGCTACCTGGGAAGGGCATCGCTACAAGAAGCTTGCCACAACACTACTGACCAAAGCATCACAGCAGTCCCCCCTTACTCCAAGCTGCCAAGCTCTTAGTCCAGGGGGGACTAAAATGGGCCAGTACTACTGCCAAGACTGTGACATCAGCATGAATTCCATCAAACAGATGGAGCAACACATGACCAGTGCCAGGCACAGAGATGGTTTAAAAGGTGGtgcaaaaaggaaaaataacaagaacaaAGGGGCATCAGTTAACAAAAGCTTGATAACCCAAGGAAAAATACCACCTCTGTTCTCAAGCTTTGTAAAGCCTGACAAACCAGAACCCAACACATTCCTGGCATGTGCAAATGAGCTACCTTTAAATCTACAAAACACCAACACACCAGGAAACAATGACAGTCCAGTAATAACGAAAAACAGCACTCCAACAATGAGATTTCAAGGAATTATGTCTTCAGAAACAACCTCTACTAATGATGTCCAGAGTAATGCGCCTAGTTTTCCAGGAAATCAACTCAATCATCAGACTTGTACTTTATCATATAGTTCAGCTGGTACCATATCTCCTGGACAGACTCCATGTGTATCTCATGGACAGTGGACACCAAACAATTATATGCAAATCTTCTGAAGTATAAGGATGTTTTTATTGTAATATCCAGCTTTTACTTCCGTAGAATTTTACAGGCTTCTTGTAGGCATAAAACATTgtttcaggggggggggagtctTCAGATTTTTAATGTATGAATTTTATATTGGTCCCCAGATGTACCCCTGTATAATATGGAGAAAAGAGAATACAGttgtttgacaaaaggttgtcatcaaccggctttgcgactacgcgacaaacccgcatgtaagcatgggtaaaaaccactgaagtgcctagctgcatatattagcaaCCGCTACACCGTCTAAGTCTGAAGTTATGCAGTGGCTTATATATGCAGCTAAGCGCGTAGTTGCAAAGCCGGttgatgacaaccttttgtcaatcgactgtaCACAGTATATTGGAAAAATGTTTACAAACATTAGTAAATGTGATGATGACCTTTGAGGAATTGGCATGATAAACATTGATACAATAAAGTTATCTCTGGTTCAAAGGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AVN9	Zinc finger protein 346 OS=Xenopus laevis OX=8355 GN=znf346 PE=1 SV=1
B0JZ85	Zinc finger protein 346 OS=Xenopus tropicalis OX=8364 GN=znf346 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009122 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF12171 all species →	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR051868 all species →	Family	Zinc finger protein 346 and matrin-type protein 4	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR022755 all species →	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46144 all species →	ZINC FINGER PROTEIN 385B-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032219059.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032219059.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

17.2Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	9.38	14.39
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	6.93	8.69
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	8.31	9.80
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.59	8.53
whole 6 week old aboral regenerate · regenerate uncut	3	3	8.33	9.06
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	6.49	10.84
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	5.33	8.76
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	11.09	17.19
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	5.42	9.79
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	8.90	9.30
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	8.45	8.93
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	4.96	8.17
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	10.36	16.06
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	3.14	9.42
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	6.01	9.11
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	6.44	11.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.39
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.58
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.17
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.69
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.46
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.65
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.80
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.76
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.38
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.53
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.28
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.98
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.06
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.89
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.06
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	10.84
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.63
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.76
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.25
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.19
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.76
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.33
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.79
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.46
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.30
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.14
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.25
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.93
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.92
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.50
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.17
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.71
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	16.06
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.58
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.45
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.42
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.11
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.91
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	11.10
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.23
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.