Gene detail

Detailed information of XP_032219077.2 in Nematostella vectensis

Genomic Location: NC_064044.1:7642160...7652946
NR annotation: XP_032219077.2, signal transducing adapter molecule 2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032363186.2

ACCATTAGAGCGGGGGCGCGCGTGACATCATGGGTATTATTATTGCTCATCACAAGAAGAAACACCGACCTAGAATCTCAAATTGTGCCGAGATATAGCACAAAAAATACACCAACATGCCGCTTTTTTCAAGCTCCTCTCCTTACGACCAGGAAGTTGAAAAAGCTACAAGCGAACTAAATACCACCGAAGACTGGCAAATTATCATGGAAATTTGCGATAAAATTCCTCGATCTCCTAACGGGCCTAAAGATGCTTTGAGGTCAATTATGAAGAGAGTGATTCACCGGAACCCCCACATTGCCATGCAGGCTCTGACActgTTGTCTGCTTGTGTCAATAACTGTGGGAAAGTCTTCCATCTTGAGATTTGTTCGAGAGACTTTGTCAGTGAAGCTAAGAGTATTCTACTCTCAAGGACCCACCCTAAAGTTATGGACAAGTTTAAGGAGTTGATCAAGGAGTGGGTCAACATGTTCAAAGAGGATCCCCAGCTGAGTTTGATTTCTGTGATGTGTGAACAACTTAAGACTGAGGGGGTGGACCTTGGTGTAGTACAGACAACCTCCAAAACTAGTAGTAGCAGCAGTAGTAGTATGAAATCCTCACCAGCAAGTTCCTCGGCCGCATCCTCACTATCCCAGGAAGAGGAGGATTTAGCTAGAGcAATTCAGTTGTCTTTACAAGACTCTGAAGGGTCAAAGCCTAAAGTATCAAGTTTGTACCCATCAGCAAAAGTACCATCGCCAACACCTATTAGAAGGGTGAAGATGCAGGAGAGAAAAAAGGTTCGAGCTCTGTATGATTTTGAGGCAGCTGAGGATAATGAACTGACCTTTAAAACTGGAGATATAATATCTATCTTAGATGACAGTGATGCTAGTTGGTGGAAGGGAGAGACCCCAAATGGCACAGGATTATTCCCATCAAACTTTGTCACCTCTGATCTTTCAGAACCTCAATCCCCCACTGTTCGAGCAGAAAAggtagaaaagaaaaagaaggtcCGGTGGGCCGATGCAGCGGCTAGGCAAGAAAATCTCCCTAAAGAGCAAgttgtaaagccaaaaatTGATGAGGACAAGATTGAGGAGTGTCTGTCAATGTTAAAGGCAGCCAGTGTGGAAGGGGACGATGAGCAGGAAGATGCAATAATTGATCTTGAATATGCTTGCCACAGTATGGAAGAAATTGTCAACAAAAAGATTGAAAAGAGCAAAGCGAAGCATCAAGATTTGTCATCTCTGAATGAGCAGTATTTACAGGCTCTAGCCCTATACCAAAAATTAATGAAGGAGCCACTCCCTATTCCACCAACACCTACATATAACTACAGCACAAGGCCTCAGGCATATGGCTATCAGCCAACTTCAGTAGCTCCACCGCAGTACCAACAGATTTATGGTCCACCACCTCCAGCATATCCACAGGCATCCCAACTACCATACAGTGAACCTTCACAAGCTGCAATGAGTGCTGGGTACTCCAGTCTAGGACCCGGCCAGCCTGCCTATCCCAATCACATGGCAGCATCTCAAGGTGCCACGCCCAATGGTTACCAGCCCCCATCCCAGCAACACCTACCACAGGCACCCCAGCAGCCCATGTCTGCACCACAGCAGTACTACCCACAGCATCAAGCACAGCATGCGTCTTACACTCAAGGGTTACCTCCACCATCAGGTCAACAGTACCCGCCGCAAGCTACATCCGGGTACTCGTCAATGGGTTCAAACGTCCCTCAGCCCCAAATGGTTTACAGCCAGCAGCCACTGTTATGATAACACTGTGGTTTGAACTGGTACAATGAATTTTAATACTACAAAATATATATGGCTAAATGGTGCATTATAAGAATGGATGTACAGAAATATGTTCTCCAGCTTGAAagacataaaaatatttgcccaTTTGAACACCCAGATTTGTGGGTGGGGATTGAGGTACACTGGCCCCAACCAGTCCCCTGGAttaaagggggggggcactggTGCCATCTGGAGCCCTGAATAATATGCCATTGCTTtgctagatttttgatgcagCTTTTTTATAGAATGGAATCAAACTGAATTCTGCTAAATCTGGAGCTACTTATCACAAAAAAGTTGCAAGCCTGTGAGAATACAGGTTCTTGTGGTTTGAATGGGAGCCATCATTTGTTATAGACTCGtcatgatttaaaaaaaagtagtcTTTGGGTAACACCTGTAAATTATGCTacctttttaaaaattattgatttgtTGGATTTGCAGTCTTTAGTCAAATTCAGGCGTTAACAAGGATCGTGGCTTAGCCAAGCTAGGACAAGTAAACATTGTGGCAAATGAAATTATGCACCAAAGCACAACGATCTTTAGGTATATACTTAGGAGTAATTAGTGATTGACATTGTAAATAAACTGATAATAGTTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70297	Signal transducing adapter molecule 1 OS=Mus musculus OX=10090 GN=Stam PE=1 SV=3
Q92783	Signal transducing adapter molecule 1 OS=Homo sapiens OX=9606 GN=STAM PE=1 SV=3
O93436	Signal transducing adapter molecule 2 OS=Gallus gallus OX=9031 GN=STAM2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005290 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species
Ubiquitin family	UBD\|Alpha-Helix\|VHS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02809 all species →	UIM	Ubiquitin interaction motif	Motif	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00790 all species →	VHS	VHS domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR035657 all species →	Domain	STAM1, SH3 domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR050670 all species →	Family	Signal Transducing Adapter Molecule	Interproscan
IPR002014 all species →	Domain	VHS domain	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45929 all species →	JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0033565 all species →	Cellular Component	ESCRT-0 complex	Interproscan
GO:0043328 all species →	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04705	STAM; signal transducing adaptor molecule	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032219077.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

21.9Max TPM

13.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	15.49	18.51
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	11.53	14.38
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	11.24	14.16
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	18.27	21.92
whole 6 week old aboral regenerate · regenerate uncut	3	3	12.26	15.37
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	17.66	19.38
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	9.50	15.04
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	17.05	19.80
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	11.01	18.42
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	11.07	16.72
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	16.28	18.17
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	16.72	20.75
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	14.73	15.86
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	11.08	17.75
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	9.73	15.58
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	6.40	19.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	18.51
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.85
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.11
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.38
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.54
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.68
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	14.16
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.03
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.52
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	21.92
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	16.68
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	16.22
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	15.37
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.77
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.63
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	19.38
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	17.64
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	15.95
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	15.04
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.47
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	19.80
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	18.76
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.60
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.42
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	14.61
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.72
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.48
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	18.17
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.94
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	14.75
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	20.75
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.09
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.33
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	15.86
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.41
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.91
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.75
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	15.48
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	15.58
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.60
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	19.19
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.